| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2973 |
|---|
| Symbol | |
|---|
| ID | 4253544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3550455 |
|---|
| End bp | 3552329 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638119609 |
|---|
| Product | von Willebrand factor, type A |
|---|
| Protein accession | YP_735101 |
|---|
| Protein GI | 113971308 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2304] Uncharacterized protein containing a von Willebrand factor type A (vWA) domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00160061 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGATATC CATCTTCAGT CTTTCGCCGT AAAACGCTCT CAAGCATTGT CGTTTCGGGA
TTAACACTCG CTATTTTGCT CGGCTTGAAT GGTTGCAGTG ATAAATCCGA CGACCAGCAA
AAGCGTGCTG AATTAGCCGA TCAAACAAAA CTCGCCGCCG AGCAACAGGC TGAGCTTAAG
CAGCAAGTAG AGTTAAAGGA CAGTGTTGAG CGTCAGGCCA ATAGGCAAAG AGATGCTGCA
ATCGCCATAC ATGAACAAGC CACGTCAACA AAATTGCGGA CAATGAATGC TGAGCATCGA
GCCTATATCG CTCAGCCTGC TGCCACTATC AGTGCGGCGC CCGCGTTAAA CGGCGATTGG
CCTGGGGCTG TGCCACCAGA GCGCAATCGA TTTGAGAAAC AAGTGCAAAA CGGCATCATG
GTTGCGGGGG AAACCCCTGT CTCGACCTTT GCTATCGATG TCGATACTGG TAGTTACACG
ACGTTAAGGC GAATGCTAAA GGAGGGGCGA TTACCGCAAA AGGACACGCT GCGGGTCGAA
GAAATGCTGA ATTATTTTTC CTATGACTAT CCATTACCGA GTAAAAATGA GGCGCCATTT
AGTGTTACCA CTGAGCTTGC ACCATCGCCC TATAACTATG ACATGATGTT ACTTCGCATC
GGTTTGAAGG GATATGAGCA GAGTAAAGCA GAACTCGGCG CCAGTAACTT AGTGTTTCTG
CTGGATGTGT CAGGGTCGAT GGCATCGCCC GATAAATTAC CTCTATTGCA AACTGCCTTG
AAAATGCTGA CTCAGCAACT GGGTGCTCAG GATAAGGTAT CGATTGTCGT CTACGCTGGC
GCAGCTGGTG TGGTGTTAGA TGGCGCGGCG GGTAACGACA GTCAAACCCT TAACTATGCG
TTAGAGCAGC TCAGTGCGGG TGGTTCTACC AATGGGGCGC AGGGTATTCA GCTTGCCTAT
CAGCTTGCGA AAAAGCACTT GGTTGAAGGC GGCATCAATC GAGTGATATT TGCGACCGAC
GGTGACTTTA ATGTCGGCAC GACTAACCTC GATGAGTTAA TCGATTTGGT TAGCGCGCAG
AAGCAACTGG GCATTGGGCT AACGACGCTC GGCTTTGGTA TGGGCGACTA CAATGACCAT
CTAATGGAGC AATTAGCCGA TAAAGGCAAT GGACAATACG CCTATATTGA TTCCCTCAAT
GAAGCGAGAA AAGTGCTGGT GGAACAGTTA AGTGCAACCT TACTGACCAT AGCCAAAGAG
GTGAAAGTGC AGGTCGAGTT TAATCCCGCC CTTGTGGCTG AGTATCGTCT TATTGGTTAT
GAGAACCGTG CCTTAGCGCG TGAAGATTTT AATAATGATA AGGTGGATGC GGGCGAAATA
GGCGCTGGGC ATACTGTGAC GGCGCTATAT GAGCTGCGTT ATGTTGATGC GGGAAATTTG
GCTAATGATA AACTTCGCTA TGGCTATAAT CCCAAGACTG GCAATGAAAA ATATAGCCGT
GATGAAATCG CCTTTCTGAA ATTACGTTAT CAGCTACCGG ATGCGACTCA AAGCCAGTTA
CTGAGTTATC CAATTCGTGC CGACCAAAGG GCAAACTCAT TAGCGCAGGC GAGTGACGAT
TTTCGTTTTG CCGCTGCAGT GGCAGGATTA GGACAGTTAC TGAATCAAAG CCACTATTTG
CATCAATTTG ATTATAATAA GCTTAGTGCG CTCACACGTT CTGCGCTGGG GGAAGATACT
AGCGGCTACC GACATGAATT TATGCAACTT GTCGATACCG CTGCGATACT CGCACAAACA
CAGCGAGTGC CAATCAAAAA ATCCTTTGAT GCCGGAGATA AACCTTTCCC GCCCGAGGAT
AAACCGCATC AGTGA
|
|---|
| Protein sequence | MRYPSSVFRR KTLSSIVVSG LTLAILLGLN GCSDKSDDQQ KRAELADQTK LAAEQQAELK
QQVELKDSVE RQANRQRDAA IAIHEQATST KLRTMNAEHR AYIAQPAATI SAAPALNGDW
PGAVPPERNR FEKQVQNGIM VAGETPVSTF AIDVDTGSYT TLRRMLKEGR LPQKDTLRVE
EMLNYFSYDY PLPSKNEAPF SVTTELAPSP YNYDMMLLRI GLKGYEQSKA ELGASNLVFL
LDVSGSMASP DKLPLLQTAL KMLTQQLGAQ DKVSIVVYAG AAGVVLDGAA GNDSQTLNYA
LEQLSAGGST NGAQGIQLAY QLAKKHLVEG GINRVIFATD GDFNVGTTNL DELIDLVSAQ
KQLGIGLTTL GFGMGDYNDH LMEQLADKGN GQYAYIDSLN EARKVLVEQL SATLLTIAKE
VKVQVEFNPA LVAEYRLIGY ENRALAREDF NNDKVDAGEI GAGHTVTALY ELRYVDAGNL
ANDKLRYGYN PKTGNEKYSR DEIAFLKLRY QLPDATQSQL LSYPIRADQR ANSLAQASDD
FRFAAAVAGL GQLLNQSHYL HQFDYNKLSA LTRSALGEDT SGYRHEFMQL VDTAAILAQT
QRVPIKKSFD AGDKPFPPED KPHQ
|
|---|
| |