| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2950 |
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| Symbol | |
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| ID | 4253521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3522891 |
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| End bp | 3526424 |
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| Gene Length | 3534 bp |
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| Protein Length | 1177 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638119586 |
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| Product | type IV pilin biogenesis protein, putative |
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| Protein accession | YP_735078 |
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| Protein GI | 113971285 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.103323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.178047 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAAAA AAATATTGTG TGCCCTGAGT GTTACTTTTG TGGTCATTGC AGGGCAAATC
CATGCAGACG ATACCGAGCT ATATCTAGTC GACTCGAGTG TGAAAACTGG CAAGCGTCCG
CAGATACTCA TTATCTTTGA TAACTCAGGC AGTATGTCAA CTGAAGATAC TAATGTTGTC
AGTTCCTATT GCTCAGCAGC TGACCAAGCT GCGAGTAACT GTACTTATCC AGATGGGTTT
GCTACCTATT TAGAGGGTTA TTCAGGCTAT ATCAGTCAAA AAGGGATTTA TTGGAATGCC
GGGGGAATTG ATAATACGAG TAACGCCCCA ACACCAGATT CACCTAATGA TTCCCGTCGT
TTTTATGCCG ATAACAATAA CTGTAATAAG GCCAAAATCG CCCTAGAGTC ACGGGGGCGT
TACACTGGGT TGTTAAGGGA GTTTAAGGCG AGTGGCCAAA GCGGCAAATG GACGGCATTG
GCTGAAAACG AAGGTTTTAA CCAGGGGCAA ATTGTTGATT GCTATCAAGA TATTATTGAG
GGTGATCCCA TAAACCCCGG TAGGTATAAA CAGGGAAATA CTTACAATAA CTTTGCCGAT
GGATATCCCA TTGATGCAAA AGCAATGTAT ACCACAGCCA CCGATAGTGA CGCTCAAAAA
GATAGTTTAG ATAAAACGGA TTTTGGTAAG GGATCGCCAG TTACTTTATA TACCGCGCAT
TATTTGGTTT GGTATAAGTG GGTGACTACG ACTACCGAGG GACAAAATAG CGGCGGAACA
GGCTCTAGAC TTGATGTGGC TAAAGCCGCA ATTGACTCGG CCTTAACAGA TTTAAACATA
GACATTGACG CTGGTCTGGC GGTCTTTAAC CTCAACTACG CCGCTGAAGG GGATGCTGAT
GGTGGTCGCA TCGTATCGTC CATTAAGCAA TTAACCAGCG CGAATCAAAC ATCGCTGATG
TCCTTGATTA ATGGTATGCC CGCACAAACT AATACCCCAC TATGTGAAAC ATTATATGAA
GCCCATCAAT ATTTTAGTGG TGGTGATGTG ACTTTTGGCA ATAAGGATGC TAATGCGAAA
GGAAACGATA AAATTGATGG ATATGTGCCT AATAGTCCGC CAAGCATCTT ATCTACAGGT
AAATACACTA CGCCATTTAA AAAATGTCCC GATACGGCTT ATATCATCTA CATTACCGAC
GGTGCACCAA CATTAGATCA TTCGGCCGAT GCTAAAGTAC TCGATTTGAC AGGCAAAGCT
GAAGTGGCTG CGGATTACTC TGGATTTGAG TTTACAAATG ATAAAGGTGA AAAAGAAAAC
AGCTATCTTC CTGCTTTAGC CGCCTATATG GCAAATAATG ACCTAGTTAA AGGTGTTACA
GACGCTACTG GAATTGATAA CAAGCAGAAT GTGCGTACTT TTACCATAGG TTTCACTGAT
GGTGCTGACG TTGCAGCAAA ATTGCTGGAA GAAACCGCTT TTAGGGGGGG GAATCCACGA
GAACTTAAAA ATGGGAATTT GGTCTCTAAA GGCTACTATA GAGCCGCAAC AGGATTGGAT
TTGATTCAAG CTTTGGATGA CGCATTAAAG TCAATTTTAT CAATCGACTC TTCCTTCACT
TCTCCAAGCA TTGCCAGTAA TAATTTTGAT AAAACCCAAA CCTATAACTC GGCTTATTTT
GCGATGTTTT TACCTGGAGA AGGCCCTCGC TGGAGCGGCA ATTTAAAAAA ATTGAAAGTG
AATTCAGCGG GTGAAATTGT TGGCCCAGGT GGTGACACAA ATGCAATTGA TAGCAATGGT
AATATCTCTG CTTCAACTTG CACTTATTGG AATGTTTGTG CCGCTGGTTC GCCAGATGGA
AATAAAGTTA ATTCGGGCGG AGTGTTACCT ATATTAAGAG AATCCCTTAA GGATCGTAAG
CTTAAATCAT TGAGTGGCAG TAATATTGTT AATATTACTG CTACAAGTTT TGTTAGTGAT
TATTCACAAG CCGATCTTGA TTGGTTATAC GGTGTCGACG TTGATGATGA TAACAATAGT
GGCAGCAATA CGGATGCTAG AGAAGATATT ATGGGCGATC CGCTTCATTC TAAGCCGCTA
GCGATTAACT TTGGTAAAAA AGGTGCTGAT TTAGATGTGC GAGTATTGGT TGGCACTAAC
CAAGGCTTAG TGCACATGTT TAAGGATTCC GATACCGGCA GCAATGATTT CAATATTGGT
AGCGTTAAAG AGTCATGGGC ATTTATCCCT CCTGAATTAT GGGGAAATGT CCCTAAATTA
AGGCAAAATC CACCTATAGG TGAACATAGT GTTTATGGTA TGGATTTGTC ACCCGTGGCA
TATACTGAGA CCAATGAAAA TGGTGAAGTT AATAAAGCAT GGGTGTTTTT AGGTATGCGT
CGAGGTGGAA GTTCATATTA TGCCCTCGAT ATCACCACTC CAGATTCGCC AATCTTTAAG
TGGAAAATTG ATTCATCTAC CAGTGGTCTC GCAAAGCTTG GCCAATCTTG GTCTGAACCT
TTAGTGACAT TCATTCCAGG TCACGAAACG CCTGTGTTGA TATTCGGTGG GGGGTTAGCT
TCGGCTACCG GAAGTGGTGA AGCCATTTAT ATTGTTGATG CAAATAAGGG GACTTTTATC
CATAGTTTCA CTGCCGATGG AATGAACAGT GTGCCGAATA AGGTTGCTGT GTTAGATAGC
AATAATGATG GTTACACTGA CCGTATTTAT GCCACTGATA TTGCTGGTAA TGTATGGCGT
ATGGATTTAC CAACAGATGA AGAATCTAAA TGGAGCATAT TTAAATTTGC CTCTATTAGT
GGTATTGCAC CCGATAATCG AATGTTTTTC GCTGAGCCAA CAGTCGCCCA GACTCAATTT
AATAATATAC ATTCCGAGAA TGGTGTGGAG TCTTATCAAA GTATTCCATA TGATGCGGTC
GCGGTGGGAA CAGGCAATAG AACTAACCCA CTAGATATCA AAACGAATGA TATGTTTTAT
GTGTTCCAAG ATAGAAACGT GGTAACTAAG CAGTATGTGG GTGCAGATGT TCCTGCTCCA
TTGAATATTA CAAATTTATA CAATGTCACC TCTGCTGCTC CCGTAAGCCA GGATGAAAAT
ATTGCATTTG GTGAGAAAAG AGGTTGGTAT TATGACTTTC CATCGACAGG TGAGAAGAGT
CTTTCTGCCT CATTGATTTT TAATGGAAAA GTGTACTTTA CATCGTTTGT TCCTCCAACG
AAACAAGACG TTGATCTTGA TGCAGGTATT TGTGGTTTCT CCGGCCAAGG CCGATTGTAT
GTGTTTGATT TACATAGAGG TACTAGGACA TCTAACACTC TGTATTATGA AGTTGGTGAG
CGCGTTCCTG ACACCCCACA AATTGTTATT CCTGAACCAG AAAAAGGAAA AGAACCTGAA
GCCTACGTGA TTGGTGTTGG TAAAGGTGAG TGCGAAAACG GCGCGTGTAA AGGTACCATT
AAGTTAGGTA GTGGTTTAAA AACTAACAAA ATTTATTATC ATATTGATGA GTAA
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| Protein sequence | MFKKILCALS VTFVVIAGQI HADDTELYLV DSSVKTGKRP QILIIFDNSG SMSTEDTNVV
SSYCSAADQA ASNCTYPDGF ATYLEGYSGY ISQKGIYWNA GGIDNTSNAP TPDSPNDSRR
FYADNNNCNK AKIALESRGR YTGLLREFKA SGQSGKWTAL AENEGFNQGQ IVDCYQDIIE
GDPINPGRYK QGNTYNNFAD GYPIDAKAMY TTATDSDAQK DSLDKTDFGK GSPVTLYTAH
YLVWYKWVTT TTEGQNSGGT GSRLDVAKAA IDSALTDLNI DIDAGLAVFN LNYAAEGDAD
GGRIVSSIKQ LTSANQTSLM SLINGMPAQT NTPLCETLYE AHQYFSGGDV TFGNKDANAK
GNDKIDGYVP NSPPSILSTG KYTTPFKKCP DTAYIIYITD GAPTLDHSAD AKVLDLTGKA
EVAADYSGFE FTNDKGEKEN SYLPALAAYM ANNDLVKGVT DATGIDNKQN VRTFTIGFTD
GADVAAKLLE ETAFRGGNPR ELKNGNLVSK GYYRAATGLD LIQALDDALK SILSIDSSFT
SPSIASNNFD KTQTYNSAYF AMFLPGEGPR WSGNLKKLKV NSAGEIVGPG GDTNAIDSNG
NISASTCTYW NVCAAGSPDG NKVNSGGVLP ILRESLKDRK LKSLSGSNIV NITATSFVSD
YSQADLDWLY GVDVDDDNNS GSNTDAREDI MGDPLHSKPL AINFGKKGAD LDVRVLVGTN
QGLVHMFKDS DTGSNDFNIG SVKESWAFIP PELWGNVPKL RQNPPIGEHS VYGMDLSPVA
YTETNENGEV NKAWVFLGMR RGGSSYYALD ITTPDSPIFK WKIDSSTSGL AKLGQSWSEP
LVTFIPGHET PVLIFGGGLA SATGSGEAIY IVDANKGTFI HSFTADGMNS VPNKVAVLDS
NNDGYTDRIY ATDIAGNVWR MDLPTDEESK WSIFKFASIS GIAPDNRMFF AEPTVAQTQF
NNIHSENGVE SYQSIPYDAV AVGTGNRTNP LDIKTNDMFY VFQDRNVVTK QYVGADVPAP
LNITNLYNVT SAAPVSQDEN IAFGEKRGWY YDFPSTGEKS LSASLIFNGK VYFTSFVPPT
KQDVDLDAGI CGFSGQGRLY VFDLHRGTRT SNTLYYEVGE RVPDTPQIVI PEPEKGKEPE
AYVIGVGKGE CENGACKGTI KLGSGLKTNK IYYHIDE
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