| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2669 |
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| Symbol | |
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| ID | 4253240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3186831 |
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| End bp | 3188483 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638119304 |
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| Product | 2-nitropropane dioxygenase, NPD |
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| Protein accession | YP_734797 |
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| Protein GI | 113971004 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
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| TIGRFAM ID | [TIGR02814] PfaD family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAATA CCACACTCGA TAATAAAAAA CTCAGTCCTT GGCCATGGCA GGTTGATGAA
GCCGCCATCA GTTTCGATAT CGATTCCCTT GGCAAAAAAC TTAAAGATCT CAATCAAGCC
TGTTACTTAG TCAATCATGC CGAAAAAGGC CTAGGCATAG CCCAAAGTGC CGAGGTTGTG
GGTCTTGCAG AAGCTCAACC CAGCAATGGC TTACACAAAA GCAATGGTTT GCATCCTGTG
AGCGCCTTCG CCCCCGCCCT TGGCACCCAA AGCTTGGGTG ACAGTAACTT TCGCCGTGTG
CATGGGGTGA AATACGCCTA CTACGCGGGC GCCATGGCCA ACGGCATCGC CTCGGAAGAG
TTAGTTATCG CCTTAGGTCA GGCGGGCATT TTGTGCTCCT TTGGCGCGGC AGGGTTAATT
CCATCGCGCG TTGAAGCCGC GATTAAACGC ATTCAAACGG CATTGCCCAA TGGCCCCTAC
GCCTTTAACC TCATTCACAG CCCGAGCGAG CCAGCGCTTG AACGTGGCAG TGTCGAACTC
TTCCTCAAGC ATCAAGTGCG TACGGTTGAG GCTTCGGCCT TCTTGGGCTT AACACCGCAA
ATCGTCTATT ACCGCGCCGC AGGCCTGAGC CGCGACGCCA ACGGCGAGAT TGTGATTGGC
AATAAAGTGA TTGCTAAAAT CAGCCGTACC GAGGTAGCGA CCAAGTTTAT GGAGCCCGCC
CCCGTTAAGA TGCTGCAACA ATTAGTGAAC GAAGGGCTTA TCAGCGAAGA GCAAATGTTG
ATGGCACAAT CTGTGCCCAT GGCCGATGAC ATTACCGCCG AAGCCGACTC TGGCGGCCAC
ACCGACAATC GCCCTCTGGT CACACTATTA CCGACCATTT TGGCGCTAAA AGATACCATT
CAAACCAAGT ACCAGTACAA AACGCCGATC CGTGTGGGCG CAGGTGGTGG TATCGGCACG
CCCGATGCGG CGCTGGCGAC CTTCAATATG GGCGCGGCCT ATATTGTCAC TGGCTCAATC
AACCAAGCCT GTGTTGAGGC TGGAGCCAGC GAACATACCC GTAAATTACT CGCCACCACT
GAAATGGCCG ATGTAACTAT GGCGCCCGCC GCCGATATGT TTGAAATGGG CGTTAAGTTA
CAAGTGGTTA AGCGCGGCAC TCTATTCCCA ATGCGCGCGA ACAAACTCTA TGAAATTTAC
ATCCGCTACG ACTCAATTGA GGCTATTCCG GCAGAGGAAA GACAAAAGCT GGAAGAGCAA
GTGTTTCGCG CGTCATTAGA TGAGATTTGG GCTGGCACTG TGGCGCACTT TAATGAACGC
GATCCTAAGC AAATTGAGCG CGCGCTGGAT AACCCAAAAC GCAAAATGGC GCTGATTTTC
CGTTGGTATT TGGGTCTTTC GAGCCGCTGG TCGAATACGG GCGAAGTTGG CCGTGAAATG
GATTACCAGA TTTGGGCAGG CCCCGCCCTC GGCGCCTTTA ATGCCTGGGC AAAAGGCAGT
TATTTAGATG ATTACCGCGA ACGCAATGCG GTGGATTTGA CGAAACATTT AATGCAAGGC
GCGGCCTACC AAGCACGGAT TAACCTGTTG TTATCCCAAG GGGTAAGTAT TCCAGTCAGC
CTGCAACGCT GGAAACCACT GCAGCGTTGC TAA
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| Protein sequence | MTNTTLDNKK LSPWPWQVDE AAISFDIDSL GKKLKDLNQA CYLVNHAEKG LGIAQSAEVV
GLAEAQPSNG LHKSNGLHPV SAFAPALGTQ SLGDSNFRRV HGVKYAYYAG AMANGIASEE
LVIALGQAGI LCSFGAAGLI PSRVEAAIKR IQTALPNGPY AFNLIHSPSE PALERGSVEL
FLKHQVRTVE ASAFLGLTPQ IVYYRAAGLS RDANGEIVIG NKVIAKISRT EVATKFMEPA
PVKMLQQLVN EGLISEEQML MAQSVPMADD ITAEADSGGH TDNRPLVTLL PTILALKDTI
QTKYQYKTPI RVGAGGGIGT PDAALATFNM GAAYIVTGSI NQACVEAGAS EHTRKLLATT
EMADVTMAPA ADMFEMGVKL QVVKRGTLFP MRANKLYEIY IRYDSIEAIP AEERQKLEEQ
VFRASLDEIW AGTVAHFNER DPKQIERALD NPKRKMALIF RWYLGLSSRW SNTGEVGREM
DYQIWAGPAL GAFNAWAKGS YLDDYRERNA VDLTKHLMQG AAYQARINLL LSQGVSIPVS
LQRWKPLQRC
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