| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2624 |
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| Symbol | |
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| ID | 4253195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3125724 |
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| End bp | 3126614 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638119259 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_734752 |
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| Protein GI | 113970959 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00868311 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACTTTG GCTTAGCGAC AACCTTGTAT CCAGACGATT ATAACTACCA AACAGAGGCA
TATAGTCCAG CATCCACGCC ACTGGATTTA GTTCAAGTGA TCCAGCAACT TCACGCTAGC
TTAGATCCGC GGACAGTCTT TGCCTGCTAC GGCAAAGTGC TGGGGCAACA TTTGCCTATT
CAAGGAGTAC GCCTGCAAGC AGAGCAATAT AAATTAAGCT GGGGCAAACG CTATGGGATC
AGTCTTAAAC GGCAGCTCAT TTGCAGTGGC ACTCCACTCA CTCTGCAGTA TCAACTACTG
ACGCCGCTGA CGCCATCACA AACACTCATC TTGCAAGAGA TTGAGCCCTT GTTGCTACAG
CCATTATTAA ATGCCATGCA ATATCAAGAA ATGTCGATGC AGGCAATGTT CGATTCCCTA
ACGGGTTTAG GCAATCGTCA CTATTACAGC CAAAGCTTGA AAAACGCAGT CGCCAGAGCC
CACAGAAAAC AAGGCGCCGT TTCGCTTATC GTATTGGATT TAGACAATTT TAAGCAACTT
AACGATAAAT ATGGCCACAA ATGCGGTGAT TATATTTTGA AGGAATTCGG TGAGATTATC
CGCAGCAGTA TACGCAGTAC GGATCAAGCC TTCCGCATTG GTGGCGACGA GTTTGTGGTA
ATAGTGCAAG GTAACATTCA TGCGGCAGGA TTACTGTGCG AGCGTATTGT CACGGCGACC
AATACCCATG CGAGCTTCCA TCAATTTGGC GTCAGCAGCA GTCTCGGGGC GGCTGAGGCG
AGCGACACCA TGGAAGCCGA ACAACTCTAT GAGCAAGCGG ATAAAACCTT GTATCAAGCC
AAAGCCTCTG GCCGTAATTG CTACAAGTTA AGCCCAACCC AACTATCTTA A
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| Protein sequence | MDFGLATTLY PDDYNYQTEA YSPASTPLDL VQVIQQLHAS LDPRTVFACY GKVLGQHLPI
QGVRLQAEQY KLSWGKRYGI SLKRQLICSG TPLTLQYQLL TPLTPSQTLI LQEIEPLLLQ
PLLNAMQYQE MSMQAMFDSL TGLGNRHYYS QSLKNAVARA HRKQGAVSLI VLDLDNFKQL
NDKYGHKCGD YILKEFGEII RSSIRSTDQA FRIGGDEFVV IVQGNIHAAG LLCERIVTAT
NTHASFHQFG VSSSLGAAEA SDTMEAEQLY EQADKTLYQA KASGRNCYKL SPTQLS
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