| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2618 |
|---|
| Symbol | |
|---|
| ID | 4253189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3115265 |
|---|
| End bp | 3116344 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638119253 |
|---|
| Product | dTDP-4-dehydrorhamnose reductase |
|---|
| Protein accession | YP_734746 |
|---|
| Protein GI | 113970953 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1091] dTDP-4-dehydrorhamnose reductase |
|---|
| TIGRFAM ID | [TIGR01214] dTDP-4-dehydrorhamnose reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000414466 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCATGTGC CTAATGGCGA GCCAGAATCA ACAATAACAG TATTGTTAAC TGGCGCAGAT
AGCCAACTGT CTAAGGCTTT ATTACGAGTG CTTGCCAAGG CGGCAAATAG ATTCGATGGC
CGCGTCTTTC GTGTGCACGC GCTAAGCCAT GCCCAGTTAG ATATCGCTGA TAAACAAAGT
GTTGCCGCTG CCTTTGCCCG CTTTAAACCT GACTGGGTGA TCAACTGCGC CGCCTATAAT
GCGGTCGATA GGGCGGAAAC GGCGGCTGAA GAGGCTTATC GTGTCAATAG CCTAGGGCCT
GAGTTATTGG CACGCGAATG TGCGCTCACG GGCGCGCGTT TGGTGCATAT CTCTAGCGAT
TACGTATTTA GTGGCGAGCC AGCGGGCGCT GCTGTACAGG CATTAAATCA GAACGGCTTA
ACCGATAGCC GTTTAATTGA AAGTGGCTTA ACTGAACGCG GGTTAACCGA AAGCGCCACG
CCTGCGCCCT TATCTGTCTA TGGGCAGAGT AAACTCGCGG GGGAGCAAGC GGTGCTGTGC
ATCTTGGCTG AGCGGGCGAT TGTTATTCGC ACCGCATGGC TCTACGGTGT CGATGGGCAT
AATTTTGTGA AAACCATGTT GAGGTTGATG GCTACTATGC CAGAAGGTCA GCCACTTACC
GTGATAAACG ACCAAATAGG TTCGCCAACA TGGACAGATG CGCTCGCACA TCTTATTTGG
CAGTTGATAG CGAGTCCGTT AAACGTCGGT TGCGGATCTG GATTATTCCA TTATGCCGGG
CAGGGGCAAT GCAGTTGGTA TGAATTTGCC CTCGAAATCC AGCGCCAAGC CTTGGCACTG
AAGTTATTAG ATAAAGCCGT GCCGATTAGC GCCATAGATA GCCTAAGTTA TGCGGCAAAA
GCGCTTGAGA AAGGTAATAA ACTGGCAGCA AGACCCAGTT ACAGCGCGCT AAATAGCGGT
AGAGTACGCC AGTGCTTAAC TGGGCAAAAT ACAGCATTAA CCCATAGCCC CGAGCTGTGG
CGTGACTGGC GATGGCAGCT TAAGGCCATG CTTGAGGATT ATGCCGCGCA AGTTCATTAA
|
|---|
| Protein sequence | MHVPNGEPES TITVLLTGAD SQLSKALLRV LAKAANRFDG RVFRVHALSH AQLDIADKQS
VAAAFARFKP DWVINCAAYN AVDRAETAAE EAYRVNSLGP ELLARECALT GARLVHISSD
YVFSGEPAGA AVQALNQNGL TDSRLIESGL TERGLTESAT PAPLSVYGQS KLAGEQAVLC
ILAERAIVIR TAWLYGVDGH NFVKTMLRLM ATMPEGQPLT VINDQIGSPT WTDALAHLIW
QLIASPLNVG CGSGLFHYAG QGQCSWYEFA LEIQRQALAL KLLDKAVPIS AIDSLSYAAK
ALEKGNKLAA RPSYSALNSG RVRQCLTGQN TALTHSPELW RDWRWQLKAM LEDYAAQVH
|
|---|
| |