| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2520 |
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| Symbol | |
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| ID | 4253091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3000758 |
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| End bp | 3002407 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638119155 |
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| Product | pyridoxal-dependent decarboxylase |
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| Protein accession | YP_734648 |
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| Protein GI | 113970855 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.212789 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAAA AACTCCCTCG CCAAGCCACC GCGTCTGAAG ACAGTTTGAT GCGAATTTTC
ACTGTGCCCG AAGATGCGGA ATCCACCTTA AGCATTATCG AGCAGAAGCT TTCCGAGGAC
TTAGCGGGCT TTTTGGGTGA CAGCATTGCC GCGCTAGAAA AGCCGCTTTC CGAAATCGAA
ACCGATTTTC AAGCCTTTGA AATTCCAAGC CAGCCGCGTT TTGTCTCCGA CTACACCGAC
GAAATCATGC AAAACCTCGT GGCGCATTCG GTGCATACGG CGGCCCCCAG TTTTATCGGC
CATATGACCT CGGCACTGCC CTATTTCGTG TTGCCACTGT CGAAAATGAT GGTGGGGCTG
AATCAAAACT TGGTCAAAAT CGAAACCTCC AAAGCCTTTA CGCCGCTTGA GCGCCAAGTG
CTCGGCATGA TGCACCATTT GATTTACGCT CAAAACGATG ATTTTTATCG TAATTGGATG
CACAGCGCCA ACCATTCCCT CGGCGCATTT TGCTCCGGCG GCACTGTGGC TAACATCACC
GCCCTGTGGA TTGCCCGCAA CCAATTACTC AAGGCCGATG GCGACTTTAA AGGCGTGACC
CGCGAAGGCT TAATCAAGGC GCTGCGCCAC TATGGCTTCG ATGATTTAGC GATTCTGGTC
TCCGAGCGCG GCCACTACTC CTTAGGTAAG GCCGTCGATC TGCTCGGTAT CGGTCGCGAC
AATATCATCA GCATCCCTAC CGATGGCAAT AACAAAGTCG ACGTTGCCAA AATGCGCGAA
GTCGCCGCCG AACTGGCAAA TAAACGCATT AAAGTCATGG CGATTGTTGG GGTGGCTGGC
ACCACCGAGA CGGGCAATAT CGACCCTCTG CGCGAACTTG CCGCCTTAGC AAGTGAGCTA
AACTGCCACT TCCATGTGGA TGCGGCTTGG GGCGGCGCAA GCTTATTATC CAATAAATAC
CGTCACTTAC TCGATGGTAT TGAACTCGCT GATTCAGTCA CCATCGATGC CCATAAGCAA
ATGTATGTCC CCATGGGCGC GGGCATGGTG TTATTTAAAA ATCCTGAGTT TGCCCATGCG
ATTGCCCACC ACGCCGAATA TATTCTGCGC CGAGGTTCCA AGGATTTAGG CAGCCAAACG
CTCGAAGGCT CACGCCCCGG CATGGCGATG TTAGTGCACG CCTGTTTGCA GATTATCGGC
CGCGATGGTT ACGAAATCCT GATCAATAAC AGCCTTGAAA AAGCGCGTTA TTTTGCCGAG
CAAATCGACG CACACCCGGA CTTTGAACTA GTCACCGCAC CAGAGCTGTG CCTGCTCACC
TATCGTTATG TGCCTTCGAA TGTGCAGGCG GCCATGCAAC TGGCGATTGA ACAAGGCGAT
AAGACCAAAC TCGCTCGCTA TAATGAGCTG CTCGATGGTC TAACCCAATT TATTCAAAAA
CACCAACGCG AACAGGGTAA ATCCTTTGTC TCGCGCACCC GAATTCAACC CGCGCGCTAC
TTTAGACAAC CCACAGTGGT GTTTCGCGTG GTATTAGCTA ATCCGTTGAC TAGCCATGAG
ATCCTTAATC AAGTGCTTAT CGAGCAAGGT GAAATTGCCG CATTAGATAA AGAGTTTTTA
CCTGCGCTAT TAGCCATGGT CAATGAATAG
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| Protein sequence | MTQKLPRQAT ASEDSLMRIF TVPEDAESTL SIIEQKLSED LAGFLGDSIA ALEKPLSEIE
TDFQAFEIPS QPRFVSDYTD EIMQNLVAHS VHTAAPSFIG HMTSALPYFV LPLSKMMVGL
NQNLVKIETS KAFTPLERQV LGMMHHLIYA QNDDFYRNWM HSANHSLGAF CSGGTVANIT
ALWIARNQLL KADGDFKGVT REGLIKALRH YGFDDLAILV SERGHYSLGK AVDLLGIGRD
NIISIPTDGN NKVDVAKMRE VAAELANKRI KVMAIVGVAG TTETGNIDPL RELAALASEL
NCHFHVDAAW GGASLLSNKY RHLLDGIELA DSVTIDAHKQ MYVPMGAGMV LFKNPEFAHA
IAHHAEYILR RGSKDLGSQT LEGSRPGMAM LVHACLQIIG RDGYEILINN SLEKARYFAE
QIDAHPDFEL VTAPELCLLT YRYVPSNVQA AMQLAIEQGD KTKLARYNEL LDGLTQFIQK
HQREQGKSFV SRTRIQPARY FRQPTVVFRV VLANPLTSHE ILNQVLIEQG EIAALDKEFL
PALLAMVNE
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