Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2516 |
Symbol | |
ID | 4253087 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2995206 |
End bp | 2996438 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638119151 |
Product | CdaR family transcriptional regulator |
Protein accession | YP_734644 |
Protein GI | 113970851 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3835] Sugar diacid utilization regulator |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.882452 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00525591 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTACGTTT TGGATCAACA CATCGCTAAA CAAATTGTGA GTCGCACCAT GAAAATCATT GGGCACAATA TCAATGTGAT GAATGGTCAG GGCGTGATCT TAGGTTCCGG CGATCCCAAA CGTATTGGCT CGACCCACGA GGGTGCGCTG CTCGCTATCG CCCAAAACCG CAATGTGGAA CTGAGTGAAG AAGTGGCCTC TGGTTTACAT GGTGTCAAAC CCGGCATCAA CTTACCCTTG CATTATCAAG GGCAAATTAT TGGTGTGATT GGTATTACTG GCGATCCAGC CGAGTTAACC CACTACGGTG AGCTGCTAAA AATGACCGCC GAAATGATTG TCGAACAAGC CAACCAGCAG GATCAGCTGC AGTGGGAAAA TCGTCAGCGT GAAGAATTTA TTTTGCAGTT GATTAAGGCG CAAACCGATG ACGATGAGCA ATTGCATCGC TGGGCCAAGC AACTCGACAT CGATATCAAT TTGCCGCGAG TGGCCGCCAT AATTGAAGTC AGTGAAAAAC AATCCACGCC AACCCAGCAA AAATCCGCTG CGTTTACTTC ATTAGCTCAG AGCGAGCAAA GCGCGGACGA GCGTAATCCC AGAGTCAGCG AAATCCTCAA GCAAGTGCTG CATTTACTGC AAAATCCCGA TCGCGGCAAC TTAATTGCCA TGACCTCGAT GTCGCAACTG GTGATCTTAA AACCGGCCTT TTTGGATGGT AAACAGTGGG ATCCTGAGCT TGAAAACCAG CGTATCGATA AACTGCTGCA GCGTTTACCG GCGCAGATGG ATTTAAATTT TAAAATCGCT CTTGGACATT TTTTCCCTGA AAAAGGCGGC ATTGCACGCT CCTACCAAAC CGCGCAGGAA ACCTTGAACT TAGGCAAGCA GCTTAACCCC GAGGGCACTA AATACCTGTT TGAAGACTAC TCCTTGCAAG TGCTGTTATC TGGGCTCAAG CATGATTGGC GTGGTCAAGC GCTGGCCAGC CCCTACCAAC AATTAGCCAA GGCCGATAAA AATGGTCAGC TACGCAAAAC CCTAGCCGCC TATATCACTC ACTTTGGTGA TGCACAGCAA TGCGCCAATG CGCTGTTTAT TCACCGAAAT ACCCTAAGAT ATCGGTTAGA TAAAATTCAG CAACTCACCA AGAGTGACAT CCATTCCCTC CACGGATTGT TAAGCCTTTA TCTTGGCCAG TTGATAGATA CCTCAAATTA CCGACTCGAG TAG
|
Protein sequence | MYVLDQHIAK QIVSRTMKII GHNINVMNGQ GVILGSGDPK RIGSTHEGAL LAIAQNRNVE LSEEVASGLH GVKPGINLPL HYQGQIIGVI GITGDPAELT HYGELLKMTA EMIVEQANQQ DQLQWENRQR EEFILQLIKA QTDDDEQLHR WAKQLDIDIN LPRVAAIIEV SEKQSTPTQQ KSAAFTSLAQ SEQSADERNP RVSEILKQVL HLLQNPDRGN LIAMTSMSQL VILKPAFLDG KQWDPELENQ RIDKLLQRLP AQMDLNFKIA LGHFFPEKGG IARSYQTAQE TLNLGKQLNP EGTKYLFEDY SLQVLLSGLK HDWRGQALAS PYQQLAKADK NGQLRKTLAA YITHFGDAQQ CANALFIHRN TLRYRLDKIQ QLTKSDIHSL HGLLSLYLGQ LIDTSNYRLE
|
| |