| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2315 |
|---|
| Symbol | |
|---|
| ID | 4252886 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2760670 |
|---|
| End bp | 2762436 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638118940 |
|---|
| Product | peptidase M61 domain-containing protein |
|---|
| Protein accession | YP_734443 |
|---|
| Protein GI | 113970650 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.261974 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCACT ATCACATCAT TCCCGTCGAT CCCAAGGCGC ACTTGTTCGC CGTCACCATG
ACGGTACAAA AGCCTCACCC TAAGCAAGTT TTTAGCCTGC CCGCGTGGCT TCCCGGCAGT
TATATGGTGC GGGATTTTGC CAAGAATATT ATCGACCTTA AAGCCACAGG CGATAACGGC
GAGCCGCTTA AGCTCACTCA ACTGGATAAA CAAACCTGGT CGGTCGAACA TCTCTGCACC
CAACTTACCT TAACCTATCA AGTTTATGCT TGGGACTTGT CGGTACGCAC CGCGCACCTC
GATATGACCC ACGGTTTCTT TAACGGCAGC AGTGTGTTTT TAGCCGCCCA CGGCTTTGAG
GCAGGTTTAC ACACAGTAAC AATGGCGGCG CCGACCGAGC CAAGCCTAAA CGAATGGCGA
CTCGCTACTA GCATGACACG CCAAAGTGGC GATGAATTTG CCTTTGGTGA GTTTTGCGCG
CAAAGCTATG ACGAACTTAT CGATCATCCG GTTGAGATGG GCCTATTCAC CCACGCTAGT
TTTGAAGCCT GCGGCGTAAG ACACGATATC GTACTAAACG GTCGCCACCG CGCCCATATG
CCGAGACTCT GCCAAGATTT AAAGGCGATT TGCGAATATC AAATCAAGCT GTTTGGCACG
CCAGCGCCCT TCGAACGTTA TCTGTTTATG ACAACAGTGC TCGACAATGG CTTTGGAGGT
TTGGAACACA GGGCATCGAC AGCACTCATG TGCTCGCGCA AGGATTTACC GCTGTCGATG
GATGCGCCGA TTAATAATGA CTACCGCACC TATTTATCGC TCTGCAGCCA TGAATATTTC
CACAGCTGGA ATGTCAAGCG CATCAAGCCA GAATGCTTCT TACCCTATCA ACTCGAGGCG
GAAACCTATA CGCCGCAGCT GTGGGCCTAT GAGGGCATCA CCTCCTATTA TGATGATTTC
CTTACCTATC GCGCAGGCTT AGTCGATGAG CAAAGCTACT TAGATATGCT GAGCGAAACC
TTTACCCGGG TATACCGCAG TCAAGGCCGC TTTAAACAAA GCATTAAGGA CTCGAGTTTT
AACGCTTGGA CTAAGTTCTA CAAACAGGAT GAGAACGCCC AAAACGCAAT TATCAGTTAT
TACACTAAGG GCGCCCTGTT TGCCCTGTAT CTGGATTTAA CCCTCAGAAG CGAGACTCAA
GGAAAATACA ACCTCGACGA TCTAATGACC ATTCTGTGGC AGGAATATGC CCTGCAAAAT
CGCGGCACCA CGGATGAATG TCATCAAAGG ATTGTTGAAC GCTTATTGGG GCGCGATTGC
CAAGATCTCT TCGCCTATTT AGACAATACC GACGATATCC CGCTGGCACC GCTACTGGCC
GAGTTTGGGG TTGAATTGAC ACTGAGAGCG AGCCAAGGCG CACAGGATGT CGGCGGTGGC
TCGGCCAAAG GGTATGAGAT TGCCTTTGGT GCTAAGACTC AAGCCGCACC AATCGGCCTT
AAAGTAACCA CTGTCGCCCA AGGCAGCCCT GCGCACCTTG CGGGCTTAAG CGCCGGAGAT
ATCTTAATTG CGGCGGATAA TCTGCAGGTG ACAGGTCAAT TTGAAGCGCT GCTTCAGCAA
TACCCACTCG GACAACGCCT AAGCCTGCAT TGGTTTAGAC GCGATGAATT GATGACGGGA
GAACTGATTA TTGCCGAGGC GCCAAAGGAT ACGGTTGCCT TAAGCATCAC AGATAAAGAT
AAGCTCCACG CTTGGCTAGG TCGTTGA
|
|---|
| Protein sequence | MIHYHIIPVD PKAHLFAVTM TVQKPHPKQV FSLPAWLPGS YMVRDFAKNI IDLKATGDNG
EPLKLTQLDK QTWSVEHLCT QLTLTYQVYA WDLSVRTAHL DMTHGFFNGS SVFLAAHGFE
AGLHTVTMAA PTEPSLNEWR LATSMTRQSG DEFAFGEFCA QSYDELIDHP VEMGLFTHAS
FEACGVRHDI VLNGRHRAHM PRLCQDLKAI CEYQIKLFGT PAPFERYLFM TTVLDNGFGG
LEHRASTALM CSRKDLPLSM DAPINNDYRT YLSLCSHEYF HSWNVKRIKP ECFLPYQLEA
ETYTPQLWAY EGITSYYDDF LTYRAGLVDE QSYLDMLSET FTRVYRSQGR FKQSIKDSSF
NAWTKFYKQD ENAQNAIISY YTKGALFALY LDLTLRSETQ GKYNLDDLMT ILWQEYALQN
RGTTDECHQR IVERLLGRDC QDLFAYLDNT DDIPLAPLLA EFGVELTLRA SQGAQDVGGG
SAKGYEIAFG AKTQAAPIGL KVTTVAQGSP AHLAGLSAGD ILIAADNLQV TGQFEALLQQ
YPLGQRLSLH WFRRDELMTG ELIIAEAPKD TVALSITDKD KLHAWLGR
|
|---|
| |