| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2283 |
|---|
| Symbol | |
|---|
| ID | 4252854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2725731 |
|---|
| End bp | 2726483 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638118908 |
|---|
| Product | ABC transporter |
|---|
| Protein accession | YP_734411 |
|---|
| Protein GI | 113970618 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0261619 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGTT GGTACCCACT GATGCTCTGT TGCCTGTTAA GCATGGCTAA TACAGTCTTT
GCAGACACGC TAAAGCTCAC GTCTTTACTG TGGCCCCCTT ATTCTGGTCA GCAACTGGCA
CAACAAGGTG CCAGTGTTGC TGTTGCCCAA GCCGCCTTTG CGCGCATGGA GCAACAACTT
CTAGTAGATT TTTATCCTTG GAGCAGGGCG ATTAAGTTAG CGGCCATGCC AAGTTCTGAT
TACATTGGCT ATTTTCCTGA ATATTATTTT GAAACAGATA AGTTTGTTTT TTCAAAACCA
ATAGGGATCA GTCCATTAGG TCTTGTTGAG CAAAAATCTC ACCCCATAAG TTGGCACTAT
TTAACCGATT TAAATCGCTA TACCTTAGGC GTCGTAAAAG ACTATGTGAA CACAGATTCG
CTGGATCTGA TGATTGCTTC AGGGAGTCAA CCAGTCGAAG CCGTGACCTC CGATGAACAA
AACATCAAGA AGGTGGCAGC TGGTCGCATC GATGGCGCAG TGATTGATGT CAACGTACTC
TATTTCCTGT TAAAGCAACC TCATTTGCAG CCATTGGCGG ATAAATTACA GGTGAATAAA
CAACTGCTTG CTAACAAACA GTTGTATGTT GCGTTTCGCA ATACGGAGGA GGGGCGGCAT
TGGCGGGATG TTTTCGACCA AGGCTTAGCT CAATTAGATA TTGAAAGCAT TATGGGGGAA
TTATTGTTTC ATGAAGAAGC TTCCCTCCGC TAA
|
|---|
| Protein sequence | MNRWYPLMLC CLLSMANTVF ADTLKLTSLL WPPYSGQQLA QQGASVAVAQ AAFARMEQQL
LVDFYPWSRA IKLAAMPSSD YIGYFPEYYF ETDKFVFSKP IGISPLGLVE QKSHPISWHY
LTDLNRYTLG VVKDYVNTDS LDLMIASGSQ PVEAVTSDEQ NIKKVAAGRI DGAVIDVNVL
YFLLKQPHLQ PLADKLQVNK QLLANKQLYV AFRNTEEGRH WRDVFDQGLA QLDIESIMGE
LLFHEEASLR
|
|---|
| |