| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2244 |
|---|
| Symbol | |
|---|
| ID | 4252815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2684501 |
|---|
| End bp | 2685967 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638118869 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_734372 |
|---|
| Protein GI | 113970579 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2267] Lysophospholipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0117248 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0610259 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCCA TCATCATAGG CTCAACCAAG CATCTATTTT TCGCGGCATT TTATGCCTGT
TTGGGGATTG CCGTCGCCCT GTTGGTGACA GGGATACACT TTCTCAATGC CAGACCCGAT
CTCTCCCTCT GGCACACCAC AGAACTTAAA AACGAATTTC GCTACAACAC CAAATTAGAC
AAATTCAGTG ATTACATCGC CTTAGAAGAT AAGTTATTTG CCGAAGTGGA GAATAAAGTC
CTCAAAAAAG TCTCGGCGAC GGATGCTTCA CCCGTGAATC GTTATGTTAA AAATAGCCTG
TCGGATCCCG CCCGTTGGCC CCATAACTGG AATCGCACCT TCGAGTGGCC TAAAGCCAAT
GCGCCCTTTG GTGTACTCCT TCTCCATGGT ATGTCTGATT CACCCTATGC CATGTCAAAT
GTGGCGGCTC ATTTTAAAGA CAAAGCCCAT GTGCTTGGAT TAAGACTCCC AGGACACGGC
ACCATCCCAA GTGGCCTAAC TAGTCTCTAT TGGCAAGACT TAGCCGCTGC GGTGAATCTG
GCAACAGCCC ATATGAAACA AGAGCTTAAA GGTAAGCCGC TGTTTGTGAT TGGCTTTTCA
ACAGGCGCCG CGGTTGCCCT TAATCATGAG CTTGAGTTAA TTAATCAGGA TAAAACGCCC
GATTATGCAG GGATGATTTT TATGTCCCCT GCAATAGGGC TTGCCCCTAT TGCGGCGGCG
GCTCGTTGGC AGAGCTGGAT TGGCCGTTTG CTCGATTTAG ATAAGTTGCA GTGGAACAGT
ATTCAGATGG AATACGATCC CTTTAAATAC ACTTCATTTG CAGTGAATGC GGGTGATGTG
GTTTACCAAT TGGCGCTGCG TAATCAAAGT CTATTGAGTG GACTAAGGCC TTCGCAGCGC
GAACAGATCC CATCCATACT CACTTTTCAA TCCGTCGCTG ATGCGACGGT TTCGAGCGCC
GCCGTGGTCG ATCTGCTTTA TCAAGTGCTG CCTGAAAAAG GCCATGAGCT AGTGTTGTTT
GATATGAATC GTACCGTGAT TAACAGCAAG TTGATGACAA ATGATCCGCT GCCATCTTTG
TTAGCGACAT CCCGTGACAA TATCCATTAC CGTGGAACGC TGATTGAAAA TATCGATAGT
GAAACCACTC AAGTCCAAGC TCGGGAGTTT GGGCTTATGT TGCAAGATAA CAGTATGCCG
GAGGTGGAAG CTTTATCCTT ACATTGGCCT TTAGGCGTGT ATTCCTTGTC CCATGTTGCC
TTGCCATTTA ATGAAGATGA TGGACTATAT GGCATTAAAA ACAATGGAAA ATTACTCAGG
ATCCAGATTG GCGCTGCCGC ATCCCGAGGC GAGCGCGGCG TTTATAGCGT GCCCGCTTCG
GAAATGTTAC GCCAAAAGTG GAATCCATTT TTCCCTTACA TGTTGACGCG GATTGACCAA
TATCGCACCG CACACATGCC CCATTAA
|
|---|
| Protein sequence | MKAIIIGSTK HLFFAAFYAC LGIAVALLVT GIHFLNARPD LSLWHTTELK NEFRYNTKLD
KFSDYIALED KLFAEVENKV LKKVSATDAS PVNRYVKNSL SDPARWPHNW NRTFEWPKAN
APFGVLLLHG MSDSPYAMSN VAAHFKDKAH VLGLRLPGHG TIPSGLTSLY WQDLAAAVNL
ATAHMKQELK GKPLFVIGFS TGAAVALNHE LELINQDKTP DYAGMIFMSP AIGLAPIAAA
ARWQSWIGRL LDLDKLQWNS IQMEYDPFKY TSFAVNAGDV VYQLALRNQS LLSGLRPSQR
EQIPSILTFQ SVADATVSSA AVVDLLYQVL PEKGHELVLF DMNRTVINSK LMTNDPLPSL
LATSRDNIHY RGTLIENIDS ETTQVQAREF GLMLQDNSMP EVEALSLHWP LGVYSLSHVA
LPFNEDDGLY GIKNNGKLLR IQIGAAASRG ERGVYSVPAS EMLRQKWNPF FPYMLTRIDQ
YRTAHMPH
|
|---|
| |