| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2235 |
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| Symbol | |
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| ID | 4252807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2671234 |
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| End bp | 2673693 |
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| Gene Length | 2460 bp |
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| Protein Length | 819 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 638118860 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_734364 |
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| Protein GI | 113970571 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0323635 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTCA TATATCATAA ATTGAATGTT TTAAGCAGTG TTTTTCCTAT TTTTTTTATT
CTGTTTGGTA GTTTTACATT CGCAAAAGAA AATGAAATGA TTGAATTTGA TAGCGCATTT
TTCAATGTAA ATGATGCCTC TTTGATTCAA AAATTTGCAT ATAGTAATTA TGTTCCTAGT
GGTGTCTATC CTGCCGATTT ATTCGTTAAT GGTTCCTTTT TAAAAAAGGT TTCTCTTGAG
GTTAAAGAGG ATGGTGGTAA GTCACGTCCA TGTATAGATA TGAATATCTT AAACTCATTA
GGAATAAAAG AGTCTATTTT AATTGAAAGT GACAATCTTA TTAAAGACTG TATAGTATTG
GAGGAGGTGA TTGTTGGCTC AGCAGTGAAC TTTACAATGG GAATGTCAAA GTTAGATATA
CAGGTGCCTC AGATATATCT TGATAAGGTC GTTAGAGGAT ATGTTGATCC TGCCGAGTGG
GAAAGAGGGA TCTCTGCGGC CTATATATCC TATGATTTAT TCGGTGTCAG TCCAAATGAT
GTCAAAAATT TTAATGCATA TTTTGATTCT GGTATAAATA TTAATGGTTG GTATTTTAAG
CATAAAGGTA TGTATAGCTG GAATGAGTAT ACAGGTGAGC AATACAACGC ACTAGACTCG
TATCTTTATA GGCCAGTTGC CAGCATTAAA GGTAATGTTG TTCTTGGGAA GAAAAATACG
AATGGTAGAT TATTTGACAC AGTACCATTG CTAGGTATGC AGATTTATGA TGACCAAAAT
ATGTTAGCAG ACTCGCAAAA AGGTTATGCG CCAGAAATTT TTGGTGTGGC TAAAACTAAT
GCAATCGTTA AGGTGGAGCA AAATGGACGT ATTATATATG AGACATTAGT GAGTCCTGGC
GAGTTTTTAA TAAATGATCT CTATCCAACA GGATATGGTG GTAATCTAAA TGTCATTATT
TTAGAAGCTG ATGGCACTGA GCAAAGATTT TCTGTTCCAT ATGAGTCAAT GGCACAATTG
TTAAGGCCTA ATACCTCAAG ATATTCATTT TCTATAGGGC AGTATAAGAA TGACAGACTT
TCATTTACTC CCATGCTTAT AGAGGGAACT TATGAGCTCG GTATTAATAA CTTTGTTACG
GGATATTGGG GGGGGCAAGC AAATGAAGAC TTTTTATCAT TGCAAGGTGG TCTCGCTTTG
GGCACAAGTT TAGGTACTTT TTCATTTGGA GGGACGCAAT CTTATGCTTT TCTAGACGAA
AATTATTCAG GGCAGAGTTA TGAATTGAAG TATAGTAAAA ACATTTTTTC GAGTGGCACT
AATCTGTCTT TAGGAGCATA TAAATATAGT ACCAAAGAGT ATATGGATTA TCAGACAGCT
ATGCTGTATT TGGACAATAT AAGGAGAGGA TACTTATATA ACGATTTATA TAATTCAAAA
AACAGGTACT TAGTTACTGT CGGCCAAAGT TTTCCTGAAG GTTATGGTAA TCTTTATCTT
TCTGGAGTTT TCGAAAACTT CTGGAATGAA ACTAACTATT CTAGACAATA TCAAGTCAGT
TATAATAATC AATATAAAAG GCTTAGCTGG GGGGTATCGG TGAGTAGAAA TGAAGATCAA
TATGGACAAT ATCAAACAAA TTATGCTCTT TCACTTTCAA TTCCTCTTGG TTTTGAAGGA
GAATTAAGGG ATTCACGAGT TAGGCTTAAT TTAAATAGAG ATAGTGATGG ATATCAACAA
GCGCAAGTTG GTTTGTCTGA TGTGGTCGGG GAAGAAAAAT TACTAAGTTA TGATGTGTCA
GTATCAAACG ATGAAAGTTC GAACTCCTTT AATGGTAATG CTTCGTATGT TAGTCCAATT
GCTAAGTTGT CTGCGAATGC AAGCAAAGGA AATAATTACA AGAGTTATGG ATTTGGTTTG
TCTGGGACAT TAGTTGGCCA TTCTGGTGGC GTTACACTTT CACCATACTC AGGAAATACT
TTTGCTTTAG TTGAAGCCAA AGGTATGGAG GGAGCAACTG TTTCTGGTTA CAAGGGAATT
AAAATAAACA ACCTAGGACA TGCTGTTGTA CCAAATTTGA GACCTTATCA AGTTAACCAT
ATTCATGTTG ACCCAAATGG CACTTCAAAG AATGCTTCCT TGAGCAATAC TGTGAATAAA
ACAGTTCCTT ACGATAGTGC AATTGTTAAA TTACAATATG GAACGGAGAT TGGGTTTTCA
ATTTTAATTA ATAGTAGTTT TAAAGGTGAT GCATTGCCAT TTGGTGCTGA TGTGATTGAT
GAGAATGGTT TAAATATTGG CAATGTAGCG CAAGGAAGTA TCGTTTTTGC AAGAACAAAA
AGTAGTAATG GAATATTAAA AGTTAATATA AAAAATGGGG AGTATTGTTC TATTAAGTAT
GATGTCAATA AAAATAAATC TAAAGGCACG TTGAATATTT TAAATGTTGA TTGTATTTAG
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| Protein sequence | MNFIYHKLNV LSSVFPIFFI LFGSFTFAKE NEMIEFDSAF FNVNDASLIQ KFAYSNYVPS
GVYPADLFVN GSFLKKVSLE VKEDGGKSRP CIDMNILNSL GIKESILIES DNLIKDCIVL
EEVIVGSAVN FTMGMSKLDI QVPQIYLDKV VRGYVDPAEW ERGISAAYIS YDLFGVSPND
VKNFNAYFDS GININGWYFK HKGMYSWNEY TGEQYNALDS YLYRPVASIK GNVVLGKKNT
NGRLFDTVPL LGMQIYDDQN MLADSQKGYA PEIFGVAKTN AIVKVEQNGR IIYETLVSPG
EFLINDLYPT GYGGNLNVII LEADGTEQRF SVPYESMAQL LRPNTSRYSF SIGQYKNDRL
SFTPMLIEGT YELGINNFVT GYWGGQANED FLSLQGGLAL GTSLGTFSFG GTQSYAFLDE
NYSGQSYELK YSKNIFSSGT NLSLGAYKYS TKEYMDYQTA MLYLDNIRRG YLYNDLYNSK
NRYLVTVGQS FPEGYGNLYL SGVFENFWNE TNYSRQYQVS YNNQYKRLSW GVSVSRNEDQ
YGQYQTNYAL SLSIPLGFEG ELRDSRVRLN LNRDSDGYQQ AQVGLSDVVG EEKLLSYDVS
VSNDESSNSF NGNASYVSPI AKLSANASKG NNYKSYGFGL SGTLVGHSGG VTLSPYSGNT
FALVEAKGME GATVSGYKGI KINNLGHAVV PNLRPYQVNH IHVDPNGTSK NASLSNTVNK
TVPYDSAIVK LQYGTEIGFS ILINSSFKGD ALPFGADVID ENGLNIGNVA QGSIVFARTK
SSNGILKVNI KNGEYCSIKY DVNKNKSKGT LNILNVDCI
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