Gene Shewmr4_2162 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2162 
Symbol 
ID4252735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2589864 
End bp2591411 
Gene Length1548 bp 
Protein Length515 aa 
Translation table11 
GC content47% 
IMG OID638118788 
ProductMltD domain-containing protein 
Protein accessionYP_734292 
Protein GI113970499 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000015187 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0463947 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAGTAT CACTTTATGT TGTAGTAGGG GGATTTGCCC TACTCACAGG TTGTCAGACC 
TTAGACAACC ATCAGGTGAC CAAACCTGAA GCTGAAACCG TCACAACCGA AAATAGCGTC
CCACAGTATT ATCTCGCAAC CGAACCTGAA TCGGCGCAAA TTACTGATGT TTGGGAGCGA
ATTCGTCAAG GAATGCAACT TCCGGTTCCT GACAAAAAAT TAGTTAACTA TTATCGCGAT
TGGTACATTA GCAACCCCAA ACACCTCGAA GTGATTTCTG AGCGTGCGGC GCCTTACATG
TATTTGATCG TCGAAGAGCT TGAAAAGCGC CATCTGCCGA TCGAGATCGC ACTCTTGCCT
ATTATTGAAA GTGCTTTCGA TCCCAGTGCT TCATCGGCCA GTGCTGCATC TGGGCTTTGG
CAATTTACGA CTCCAATGGC AAGCCATTTT GGGTTAGAGA TGAATTGGTG GTACGACGGC
CGTCGTGATG TGCCCGCCTC CACCGTAGCC GCCTTGGACA TGCTCGAATA CCTGTACGAC
AAAACCAATA ATAATTGGCT CTATGCGATT GCGGCCTACA ATTCTGGTGA GTCTCGCGTC
CTCAATGCGA TTAAACGCAA TGAGGATAAA GGACTTAAAA CCGATTTTTG GTCACTCGAT
CTCCCAAAAG AGACTGAGCG TTACGTGCCA CAATTATTGG CCCTTGCCGA AGTGATAAAA
CATGCCGACG AGTACGGTAT TACACTCGCG CCAATTGATA ACAGCCCTTC TATCGAAGTA
GTTGATATCG ATAGCCAAAT TGACTTGGCC ATGGCGGCAG GGCTCGCCAA TATGACGACC
CATGAGCTAT TAAAACTCAA TCCTGGATAC AATCGCTGGG CGACCGCTCC GACTGGCCCC
CATACCTTGG TATTGCCGAT TGATAAGTCA GAAGAGTTTA AAAAAGCACT GGCCGAAACC
GAGAGTGATG CCCGTGTGAG TTGGCTCAGA TACACCATTA AATCCGGTGA CAGTATCGGC
GCCATCGCCC AGAAACACCA TACCACAGTC AATGCGATCC GCGCGGCTAA TGGTATGAAA
AATAACACTA TCGTCGCTGG AAGACATCTG ATTATCCCCG TATCCGCCGA CGATAAACAG
CTATATGCGA TGTCAACCAG CCAGAAATTA CCCAAAAAAG CGGCAACTTC GACCTCTGGC
AATAAGTTGA CTTACCAAGT GAAATCCGGC GACACCCTGT GGCAAATAGC TCAAGCTCAT
AAAGTATCGG TTAAGCAGCT CACTGCTTGG AACCATTTAA GCAAAGACAG TAAATTGCAG
ATGGGCCAAA AACTGATCAT AGTAGCACCG CAAACCCAAG TTGCGGCGGA GCAAATTCGT
ACCGTCAGCT ACAAGGTGAA ATCTGGTGAT TCGTTAGCAC GCATTGCCAG CAAGTTTAAA
GTGACCGTCG CTGAACTGCT CGAATGGAAC AGCTTAACGC CATCACAATA TATTCAACCC
GGCCAAGTGT TAAAGCTGGT TGTGGATGAA AGCAATTTAA ATGCCTAA
 
Protein sequence
MRVSLYVVVG GFALLTGCQT LDNHQVTKPE AETVTTENSV PQYYLATEPE SAQITDVWER 
IRQGMQLPVP DKKLVNYYRD WYISNPKHLE VISERAAPYM YLIVEELEKR HLPIEIALLP
IIESAFDPSA SSASAASGLW QFTTPMASHF GLEMNWWYDG RRDVPASTVA ALDMLEYLYD
KTNNNWLYAI AAYNSGESRV LNAIKRNEDK GLKTDFWSLD LPKETERYVP QLLALAEVIK
HADEYGITLA PIDNSPSIEV VDIDSQIDLA MAAGLANMTT HELLKLNPGY NRWATAPTGP
HTLVLPIDKS EEFKKALAET ESDARVSWLR YTIKSGDSIG AIAQKHHTTV NAIRAANGMK
NNTIVAGRHL IIPVSADDKQ LYAMSTSQKL PKKAATSTSG NKLTYQVKSG DTLWQIAQAH
KVSVKQLTAW NHLSKDSKLQ MGQKLIIVAP QTQVAAEQIR TVSYKVKSGD SLARIASKFK
VTVAELLEWN SLTPSQYIQP GQVLKLVVDE SNLNA