| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2060 |
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| Symbol | |
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| ID | 4252633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2451094 |
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| End bp | 2451708 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638118679 |
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| Product | rhomboid family protein |
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| Protein accession | YP_734190 |
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| Protein GI | 113970397 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00283359 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAACTGG TGACGTTAAA AAAACTCGGC CCCTATTGGT TGGCGCTAAT CGTCAGTCTG
CTCTGCGCAC TCTTGTATGT TGCGGGACTT CTTACCCCGA GCATAGATAA CTTGCTCGCC
TATCGCCGCA GCGCTATCAG TGACGGCCAG TGGTGGCGTC TGATCACAGG CAATCTACTG
CATACCAATC ATTGGCACCT GTTGATGAAC CTCGCAGGAT TATGGGTAGT GTTGTTTTTG
CACCACTTTC ATTACCGACT TAAAGGATTA ACCGCGCTGT TTATCCTACT CTGTCTGTTT
GAAGGCATTG GCCTGTATCT AGGTTATCCG CAACTCTTAG GCTATGTTGG GCTGAGCGGC
ATGTTACACG GCCTATTTAG TTATGGTGCT GTGCAGGATA TACGCCGCAA AATGCGCTCG
GGTTATTTGC TGCTGCTCGG CGTGATAGTC AAAGTCGGCC ACGAACAGTT TTATGGCGCA
AGTGACGATG TGACCGCAAT GATTGGTGCA CGCGTGGCCA CCGAGGCACA TTTAGTCGGC
CTGATCTGCG GCTTAGTCTG CGCGTTACTA TTCTTTGTAC TCCAACGCAC GATGTTAACC
AAACAAAAAG CCTAA
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| Protein sequence | MKLVTLKKLG PYWLALIVSL LCALLYVAGL LTPSIDNLLA YRRSAISDGQ WWRLITGNLL
HTNHWHLLMN LAGLWVVLFL HHFHYRLKGL TALFILLCLF EGIGLYLGYP QLLGYVGLSG
MLHGLFSYGA VQDIRRKMRS GYLLLLGVIV KVGHEQFYGA SDDVTAMIGA RVATEAHLVG
LICGLVCALL FFVLQRTMLT KQKA
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