| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1875 |
|---|
| Symbol | |
|---|
| ID | 4252449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2231926 |
|---|
| End bp | 2232810 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638118486 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_734006 |
|---|
| Protein GI | 113970213 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACGA CCTTGCGATA CACGGCTAAT GAACTCGAAA TGCGCAGTTT TAAGCGTTTC
GAGACCCAAT TTGCCCACTT AGGCTTTAAT CATTTTCAAG CCATTGCCCG ACTGCGCCCT
TGGGTGCAGC GTTATTTTCA CTTGCATGTC GCGGAAGATT TACCACAGCC AATCGAACAA
TGCTTCTATC CTGACGGCGG CACAAGCCTG CATTTCTATT TACCATCACC CAGCACTGGC
GATAGGCCTT TAGCGTATTT TTACTCGGGA CAGCAGCGGC ATTATCACAG CTTCGCACCG
GGTACCGAAC AAATTACGGT GCGTTTTCAG CCCGGTGGCG CATTCCATTT ATTGGGTCTT
GAGCTTGCCG CTATTCGCGT CGATACGACA GCAAACGTTA TCGATGTGAC CCAGTGGCCC
ATCGTTGGTT TAACGGCGCT CTTATACCAA CTCGTCGACA CACCACAGCC TAGCGAGCGT
ATCGCCCTCG TGGAATGCTG GCTATTGCAA CGAGCGAAGC AATTAGACTT AAGCTTATCG
ACGCGAATGA GCCTAGTTCC CGCAACCTTG CCTCGACTCA TCCACACCCA AGCCAATTTA
GACACGTTTT ACGGGCAACT CCCCATAAGT CGGCGCCAAT TTGAACGTAA ATTTAAGCAG
GAAACGGGTT TATCGCCCGC GCAATTATTG CAGCTGAATC GAGTCAAAAT CGCCCGCAAC
TTATTGACCC AATCGCCATC CCTTAGCCTA GCGCAGGTGG CCTTCGATTG TGGATTTTAC
GATCAAGCCC ATCTACATCA GCATTTTTTG CGGGTAATGC AGCAAACACC GGGGCAATAT
AAAAAACGCA AGATGTCGCA AATCTCCAAT AAAACGCCCG ATTAA
|
|---|
| Protein sequence | MVTTLRYTAN ELEMRSFKRF ETQFAHLGFN HFQAIARLRP WVQRYFHLHV AEDLPQPIEQ
CFYPDGGTSL HFYLPSPSTG DRPLAYFYSG QQRHYHSFAP GTEQITVRFQ PGGAFHLLGL
ELAAIRVDTT ANVIDVTQWP IVGLTALLYQ LVDTPQPSER IALVECWLLQ RAKQLDLSLS
TRMSLVPATL PRLIHTQANL DTFYGQLPIS RRQFERKFKQ ETGLSPAQLL QLNRVKIARN
LLTQSPSLSL AQVAFDCGFY DQAHLHQHFL RVMQQTPGQY KKRKMSQISN KTPD
|
|---|
| |