| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1861 |
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| Symbol | |
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| ID | 4252435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2211862 |
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| End bp | 2212974 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638118472 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_733992 |
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| Protein GI | 113970199 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.680929 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00126667 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGTGAATA GAGTAAAACC AATCAACATT GGAATGGGTT TGTGTTGCGC AAGCATTGCA
TTAGTGCTCG CTGGCTGTGG CAGCAATGAA GACCAAGCCC TAACAATCTC AAAGCGTCCG
TTAGTGCAAG TGATGGAATT ACCATCTCCT GTGACAGATA AAAATTACAA GTTTAGCGGC
GTCTTGGAGT CGGAAAATCG TGCCGATTTG TCTTTTCGAG TCCAAGGCGT GCTCGCAGAA
TTACTGGCCG AGGAAGGGAC TGAGGTTACC AAGGGACAAG TGATTGCAAG GCTCGATCCC
CATGATTTCC AAGTCAGTGT ATTGGAGTTA ACCGCCAAGC TCGATGAGGC GAAAACAAAC
CACCAATTGG CGAAAATTGA ACTGCAAAGG GTCAAGAGTG CGATTAATGA TCGTGCCATT
GCCAGTGTGA AATTAGACCG TGCAGTTGCC GCTGAAGCAC GTGCTAAAGC AGGGGTTGAG
TTAGTCAGTC AGTCGCTTAA AAAAGCGCAG GATGCCCTAG GTTACACCGA GCTGACTGCA
CCCTATAGCG GCGTGATAGG TAAAACCTAT GTTGACCAAC ACGAACAAGT CAACGTGGGG
ACAAAAATCC TCACCATTCA TCGCCCCGAA TTACTCAACG CAGTTGTAGA CGTGCCCGAG
AGTCAGATCT GGAATCTTAA TCTTGGTTCA GTAGGTCAAG TCACCTGGTT TAAGGGAACA
GAAGCCGTGC CCGCTGTGGT GGCGAAAATT GCGTCTGTGC CCGATCGTTT TAAGCGCACC
TATGAGGTGA CATTTAACCT ACAACATTCT CCAAAACAGT TAGTCGCGGG TAAGGCGGTG
AGTGTGGACC TCGCTCTGCC TTATGCCAGC GATAAGCCGA TTTATTGCAT TCCAGCAATG
GCGGTTGCGA GCCAAGAGAC TCAGCTCTAT GTGAACCGTG TAACTGCCGA ACATGTTAAG
GCGGTTCCGG TCGAATCCGT GAGCCAGACA GATGACTCCC TATGTGTGAC AGGCAATCTC
GCCCCCGGAG AGCAGATAGT GATCGCTGGA GGTGCTTTTG TTGAAGAAGG CCAAGCCGTA
ACCATTTTGC ATGGGGCGTC GGTTAAATCA TGA
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| Protein sequence | MVNRVKPINI GMGLCCASIA LVLAGCGSNE DQALTISKRP LVQVMELPSP VTDKNYKFSG
VLESENRADL SFRVQGVLAE LLAEEGTEVT KGQVIARLDP HDFQVSVLEL TAKLDEAKTN
HQLAKIELQR VKSAINDRAI ASVKLDRAVA AEARAKAGVE LVSQSLKKAQ DALGYTELTA
PYSGVIGKTY VDQHEQVNVG TKILTIHRPE LLNAVVDVPE SQIWNLNLGS VGQVTWFKGT
EAVPAVVAKI ASVPDRFKRT YEVTFNLQHS PKQLVAGKAV SVDLALPYAS DKPIYCIPAM
AVASQETQLY VNRVTAEHVK AVPVESVSQT DDSLCVTGNL APGEQIVIAG GAFVEEGQAV
TILHGASVKS
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