Gene Shewmr4_1635 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1635 
SymbolsucA 
ID4252211 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1936356 
End bp1939175 
Gene Length2820 bp 
Protein Length939 aa 
Translation table11 
GC content50% 
IMG OID638118247 
Product2-oxoglutarate dehydrogenase E1 component 
Protein accessionYP_733768 
Protein GI113969975 
COG category[C] Energy production and conversion 
COG ID[COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes 
TIGRFAM ID[TIGR00239] 2-oxoglutarate dehydrogenase, E1 component 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCAAG GCATCATGAA AGCCTGGCTC GAATCATCTC ACTTAAGTGG TGCAAATTCG 
ACCTACGTAG AAGAGATGTA TGAAGCCTAT CAAGAAGACC CACAGTCAGT CTCTGACGAT
TGGCGTGCGG TATTTGATAA TCTCCCTCCG GTGAACGGTG CTTCTAAAGA CGCGCCTGAA
GCGGCTCACT CCAAAGTACG TGATTATTTT CGCAGTTTAG CGATGGACGG ACGTCATAAG
AGCGCAGCTC GTGTGACCGA TCCTGAGTTG GATGCTAAGC AAGTTAAAGT GCTACAGCTG
ATCAACGCCC ACCGTTTCCG TGGTCACCAA GGGGCTAACC TCGACCCGTT AGAATTGTGG
AAACGTGAAC CTGTTGCCGA TTTAGATCCC GCATTCCACG GTCTGACCAA AGAAGACATG
GAACGTGAGT TCAACACTGG CTCGTTCGCC CACGGCGGCG AAACCATGAA GCTGGCTGAC
TTAGTCAAAG CGCTAAAAGC CACTTACTGT GGTTCGATTG GCGCCGAATA CATGCACATT
ACCGATACCG ATGAGAAGCG TTGGATCCAA CAACGTCTCG AACCATCCTT AGGTAAAGCC
AACTACGATA AAAGCGTTAA GACCCGCATT CTCGAAGGCC TAAATGCTGC TGAAGGCATT
GAAAAATATT TAGGCGCTAA ATTCCCAGGT GCAAAACGCT TCTCGTTAGA AGGCGGCGAT
GCGTTAGTCC CTATGATGCG CGAAATCATT TATCGCGCAG GCGAAGCGGG CACTAAAGAA
ATCGTAGTCG GTATGGCTCA CCGTGGTCGT TTAAACGTAC TGGTTAACGT GTTAGGTAAG
CGTCCAGCAG AACTGTTTGA CGAGTTCGCC GGTAAGCACG CCGATACCCA CGGTTCAGGC
GACGTAAAAT ACCACCAAGG TTTCTCTTCA GATTTCGAAA CGCCGGGCGG CAACGTGCAC
TTAGCACTGG CCTTTAACCC ATCACACCTT GAAATCGTTA ACCCTGTGGT TATGGGCTCT
GTCCGTGCTC GTCAAGACCG CCGTGGTTGT AAAGACGGTT TACAGGTGAT GCCAATTACG
ATTCACGGTG ACTCTGCAAT TGCTGGTCAA GGTATCGTGC AAGAGACATT CAACATGTCT
CAAACCCGTG GCTTTAAAGT GGGCGGCAGC ATCCGTATTG TTGTGAACAA CCAAGTTGGT
TTTACAACGT CAAACCACTT TGATGTGCGT TCAACTGAAT ACTGTACTGA CATCGCTAAG
ATGGTTCAGG CACCGATTTT CCACGTGAAC TCTGACGATC CAGAAGCCGT TGCCTTTGTT
GCTCAGCTTG CTGTTGATTA TCGTAACGAG TTTAAACGTG ACGTGGTGAT TGATTTAGTG
TGTTACCGCC GTCATGGCCA CAACGAAGCT GATGAGCCAA GTGCAACTCA GCCACTGATG
TATGCCAAGA TCAAGAAACA CCCTACGCCA CGTAAGATCT ATGCTGACAA ACTGATCGCC
GAAAACGCTA TCGGCGCTGA TGAAGTGACC AGCATGATCA ACACTTACCG CGACGCCTTA
GATCAAGGCG ACTGCGTAGT GAAAGAATGG CGCCCAATGA CACTGCACAC AGTGGATTGG
AGTCCGTATA TTGGCCGTGA GTGGGACGAA GCGTATCAAG CCTCTATGCC ACTGGCGCGC
TTACAGAATC TAGCTGACAA ACTGAGCTAC GTACCAGAGA GCCACCCGCT GCATTCACGC
GTTGCTAAAA TTTATGGCGA TCGCGTTGCC ATGGCAAAGG GCGAGAAGCT ACTCGACTGG
GGCTTTGCTG AAACTTTAGC TTACGCCACG ATTCTTGAAG ATAAGCAACG TGTTCGCATT
ACAGGTCAAG ACTCTGGCCG TGGTACTTTC TTCCACCGTC ACGCGGTTCT GCACAACCAA
AACGATGCGA CAACATACTT ACCACTGCGT AACTTGTCTG AAGACCAAGG TCCAATCGAC
ATTACTGACT CAGTATTGTC TGAAGCATCA GTACTCGCCT TCGAATACGG TTATGCGACG
GCGGAACCTG GTGGTCTGGC GATTTGGGAA GCCCAATTCG GTGACTTTGC TAACTGTGCG
CAAGTGGTTA TCGACCAGTT CTTGTCTTCT GGTGAGCAAA AGTGGGGCCG TCTGTGCGGT
CTGACTATGC TGTTACCACA CGGTTACGAA GGTCAAGGTC CAGAACACTC AAGCGCCCGT
TTAGAGCGTT TCTTGCAGAT GTGTGCTAAC CACAACATGC AAGTTTGTGT GCCATCAACG
CCAGCACAGG TTTACCATAT GCTGCGTCGC CAAGTGGTTC GCCCAATGCG TCGTCCACTG
GTAGTGATGT CACCTAAATC ATTGCTACGT CACCCGCTAG CGGTTTCTAG CATGGAAGAA
TTGGCTAATG GCACCTTCCA AAACGTGATT GGTGAAATCG ATACGTTAGA AGCGAGCAAG
GTCGATCGCG TCGTGTTCTG TAGCGGTAAG GTATACTTCG AGCTGCTGGA AAAACGCCGT
AAAGAAAACA TCAATAACAT CGCAATAATC CGTGTCGAAC AGTTATATCC GTTCCCACAT
GAAGAAATGG TAGCAGCCTT AGCTGACTAT CAACATGTGA AGGATTTTGT ATGGTGTCAG
GAAGAGCCGC AAAACCAGGG TGCTTGGTAC TCTAGCCAAC ATCACTTCTG GGCAGCTATC
CCTGCGGGAG CAAAACTGAC CTACGCTGGT CGTGAAGCAT CTGCTGCACC AGCCTGTGGT
TACCCAGAGC TGCATGCTCA CCAACAAGAA TCTTTAGTGA ACAGTGCCCT AAAGCTGTAA
 
Protein sequence
MHQGIMKAWL ESSHLSGANS TYVEEMYEAY QEDPQSVSDD WRAVFDNLPP VNGASKDAPE 
AAHSKVRDYF RSLAMDGRHK SAARVTDPEL DAKQVKVLQL INAHRFRGHQ GANLDPLELW
KREPVADLDP AFHGLTKEDM EREFNTGSFA HGGETMKLAD LVKALKATYC GSIGAEYMHI
TDTDEKRWIQ QRLEPSLGKA NYDKSVKTRI LEGLNAAEGI EKYLGAKFPG AKRFSLEGGD
ALVPMMREII YRAGEAGTKE IVVGMAHRGR LNVLVNVLGK RPAELFDEFA GKHADTHGSG
DVKYHQGFSS DFETPGGNVH LALAFNPSHL EIVNPVVMGS VRARQDRRGC KDGLQVMPIT
IHGDSAIAGQ GIVQETFNMS QTRGFKVGGS IRIVVNNQVG FTTSNHFDVR STEYCTDIAK
MVQAPIFHVN SDDPEAVAFV AQLAVDYRNE FKRDVVIDLV CYRRHGHNEA DEPSATQPLM
YAKIKKHPTP RKIYADKLIA ENAIGADEVT SMINTYRDAL DQGDCVVKEW RPMTLHTVDW
SPYIGREWDE AYQASMPLAR LQNLADKLSY VPESHPLHSR VAKIYGDRVA MAKGEKLLDW
GFAETLAYAT ILEDKQRVRI TGQDSGRGTF FHRHAVLHNQ NDATTYLPLR NLSEDQGPID
ITDSVLSEAS VLAFEYGYAT AEPGGLAIWE AQFGDFANCA QVVIDQFLSS GEQKWGRLCG
LTMLLPHGYE GQGPEHSSAR LERFLQMCAN HNMQVCVPST PAQVYHMLRR QVVRPMRRPL
VVMSPKSLLR HPLAVSSMEE LANGTFQNVI GEIDTLEASK VDRVVFCSGK VYFELLEKRR
KENINNIAII RVEQLYPFPH EEMVAALADY QHVKDFVWCQ EEPQNQGAWY SSQHHFWAAI
PAGAKLTYAG REASAAPACG YPELHAHQQE SLVNSALKL