Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1635 |
Symbol | sucA |
ID | 4252211 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1936356 |
End bp | 1939175 |
Gene Length | 2820 bp |
Protein Length | 939 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638118247 |
Product | 2-oxoglutarate dehydrogenase E1 component |
Protein accession | YP_733768 |
Protein GI | 113969975 |
COG category | [C] Energy production and conversion |
COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCACCAAG GCATCATGAA AGCCTGGCTC GAATCATCTC ACTTAAGTGG TGCAAATTCG ACCTACGTAG AAGAGATGTA TGAAGCCTAT CAAGAAGACC CACAGTCAGT CTCTGACGAT TGGCGTGCGG TATTTGATAA TCTCCCTCCG GTGAACGGTG CTTCTAAAGA CGCGCCTGAA GCGGCTCACT CCAAAGTACG TGATTATTTT CGCAGTTTAG CGATGGACGG ACGTCATAAG AGCGCAGCTC GTGTGACCGA TCCTGAGTTG GATGCTAAGC AAGTTAAAGT GCTACAGCTG ATCAACGCCC ACCGTTTCCG TGGTCACCAA GGGGCTAACC TCGACCCGTT AGAATTGTGG AAACGTGAAC CTGTTGCCGA TTTAGATCCC GCATTCCACG GTCTGACCAA AGAAGACATG GAACGTGAGT TCAACACTGG CTCGTTCGCC CACGGCGGCG AAACCATGAA GCTGGCTGAC TTAGTCAAAG CGCTAAAAGC CACTTACTGT GGTTCGATTG GCGCCGAATA CATGCACATT ACCGATACCG ATGAGAAGCG TTGGATCCAA CAACGTCTCG AACCATCCTT AGGTAAAGCC AACTACGATA AAAGCGTTAA GACCCGCATT CTCGAAGGCC TAAATGCTGC TGAAGGCATT GAAAAATATT TAGGCGCTAA ATTCCCAGGT GCAAAACGCT TCTCGTTAGA AGGCGGCGAT GCGTTAGTCC CTATGATGCG CGAAATCATT TATCGCGCAG GCGAAGCGGG CACTAAAGAA ATCGTAGTCG GTATGGCTCA CCGTGGTCGT TTAAACGTAC TGGTTAACGT GTTAGGTAAG CGTCCAGCAG AACTGTTTGA CGAGTTCGCC GGTAAGCACG CCGATACCCA CGGTTCAGGC GACGTAAAAT ACCACCAAGG TTTCTCTTCA GATTTCGAAA CGCCGGGCGG CAACGTGCAC TTAGCACTGG CCTTTAACCC ATCACACCTT GAAATCGTTA ACCCTGTGGT TATGGGCTCT GTCCGTGCTC GTCAAGACCG CCGTGGTTGT AAAGACGGTT TACAGGTGAT GCCAATTACG ATTCACGGTG ACTCTGCAAT TGCTGGTCAA GGTATCGTGC AAGAGACATT CAACATGTCT CAAACCCGTG GCTTTAAAGT GGGCGGCAGC ATCCGTATTG TTGTGAACAA CCAAGTTGGT TTTACAACGT CAAACCACTT TGATGTGCGT TCAACTGAAT ACTGTACTGA CATCGCTAAG ATGGTTCAGG CACCGATTTT CCACGTGAAC TCTGACGATC CAGAAGCCGT TGCCTTTGTT GCTCAGCTTG CTGTTGATTA TCGTAACGAG TTTAAACGTG ACGTGGTGAT TGATTTAGTG TGTTACCGCC GTCATGGCCA CAACGAAGCT GATGAGCCAA GTGCAACTCA GCCACTGATG TATGCCAAGA TCAAGAAACA CCCTACGCCA CGTAAGATCT ATGCTGACAA ACTGATCGCC GAAAACGCTA TCGGCGCTGA TGAAGTGACC AGCATGATCA ACACTTACCG CGACGCCTTA GATCAAGGCG ACTGCGTAGT GAAAGAATGG CGCCCAATGA CACTGCACAC AGTGGATTGG AGTCCGTATA TTGGCCGTGA GTGGGACGAA GCGTATCAAG CCTCTATGCC ACTGGCGCGC TTACAGAATC TAGCTGACAA ACTGAGCTAC GTACCAGAGA GCCACCCGCT GCATTCACGC GTTGCTAAAA TTTATGGCGA TCGCGTTGCC ATGGCAAAGG GCGAGAAGCT ACTCGACTGG GGCTTTGCTG AAACTTTAGC TTACGCCACG ATTCTTGAAG ATAAGCAACG TGTTCGCATT ACAGGTCAAG ACTCTGGCCG TGGTACTTTC TTCCACCGTC ACGCGGTTCT GCACAACCAA AACGATGCGA CAACATACTT ACCACTGCGT AACTTGTCTG AAGACCAAGG TCCAATCGAC ATTACTGACT CAGTATTGTC TGAAGCATCA GTACTCGCCT TCGAATACGG TTATGCGACG GCGGAACCTG GTGGTCTGGC GATTTGGGAA GCCCAATTCG GTGACTTTGC TAACTGTGCG CAAGTGGTTA TCGACCAGTT CTTGTCTTCT GGTGAGCAAA AGTGGGGCCG TCTGTGCGGT CTGACTATGC TGTTACCACA CGGTTACGAA GGTCAAGGTC CAGAACACTC AAGCGCCCGT TTAGAGCGTT TCTTGCAGAT GTGTGCTAAC CACAACATGC AAGTTTGTGT GCCATCAACG CCAGCACAGG TTTACCATAT GCTGCGTCGC CAAGTGGTTC GCCCAATGCG TCGTCCACTG GTAGTGATGT CACCTAAATC ATTGCTACGT CACCCGCTAG CGGTTTCTAG CATGGAAGAA TTGGCTAATG GCACCTTCCA AAACGTGATT GGTGAAATCG ATACGTTAGA AGCGAGCAAG GTCGATCGCG TCGTGTTCTG TAGCGGTAAG GTATACTTCG AGCTGCTGGA AAAACGCCGT AAAGAAAACA TCAATAACAT CGCAATAATC CGTGTCGAAC AGTTATATCC GTTCCCACAT GAAGAAATGG TAGCAGCCTT AGCTGACTAT CAACATGTGA AGGATTTTGT ATGGTGTCAG GAAGAGCCGC AAAACCAGGG TGCTTGGTAC TCTAGCCAAC ATCACTTCTG GGCAGCTATC CCTGCGGGAG CAAAACTGAC CTACGCTGGT CGTGAAGCAT CTGCTGCACC AGCCTGTGGT TACCCAGAGC TGCATGCTCA CCAACAAGAA TCTTTAGTGA ACAGTGCCCT AAAGCTGTAA
|
Protein sequence | MHQGIMKAWL ESSHLSGANS TYVEEMYEAY QEDPQSVSDD WRAVFDNLPP VNGASKDAPE AAHSKVRDYF RSLAMDGRHK SAARVTDPEL DAKQVKVLQL INAHRFRGHQ GANLDPLELW KREPVADLDP AFHGLTKEDM EREFNTGSFA HGGETMKLAD LVKALKATYC GSIGAEYMHI TDTDEKRWIQ QRLEPSLGKA NYDKSVKTRI LEGLNAAEGI EKYLGAKFPG AKRFSLEGGD ALVPMMREII YRAGEAGTKE IVVGMAHRGR LNVLVNVLGK RPAELFDEFA GKHADTHGSG DVKYHQGFSS DFETPGGNVH LALAFNPSHL EIVNPVVMGS VRARQDRRGC KDGLQVMPIT IHGDSAIAGQ GIVQETFNMS QTRGFKVGGS IRIVVNNQVG FTTSNHFDVR STEYCTDIAK MVQAPIFHVN SDDPEAVAFV AQLAVDYRNE FKRDVVIDLV CYRRHGHNEA DEPSATQPLM YAKIKKHPTP RKIYADKLIA ENAIGADEVT SMINTYRDAL DQGDCVVKEW RPMTLHTVDW SPYIGREWDE AYQASMPLAR LQNLADKLSY VPESHPLHSR VAKIYGDRVA MAKGEKLLDW GFAETLAYAT ILEDKQRVRI TGQDSGRGTF FHRHAVLHNQ NDATTYLPLR NLSEDQGPID ITDSVLSEAS VLAFEYGYAT AEPGGLAIWE AQFGDFANCA QVVIDQFLSS GEQKWGRLCG LTMLLPHGYE GQGPEHSSAR LERFLQMCAN HNMQVCVPST PAQVYHMLRR QVVRPMRRPL VVMSPKSLLR HPLAVSSMEE LANGTFQNVI GEIDTLEASK VDRVVFCSGK VYFELLEKRR KENINNIAII RVEQLYPFPH EEMVAALADY QHVKDFVWCQ EEPQNQGAWY SSQHHFWAAI PAGAKLTYAG REASAAPACG YPELHAHQQE SLVNSALKL
|
| |