| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1534 |
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| Symbol | |
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| ID | 4252112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1809200 |
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| End bp | 1812046 |
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| Gene Length | 2847 bp |
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| Protein Length | 948 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638118138 |
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| Product | PKD domain-containing protein |
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| Protein accession | YP_733669 |
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| Protein GI | 113969876 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2374] Predicted extracellular nuclease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.97112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAATA ACAAAACACT GTTGGCGTTA GCCATCAGTA GCGTGTGTGG GTTTGCCCAT
GCTGCCGATA ATCTGATTAT TTCTGAATAT GTTGAAGGCA GCAGCAATAA CAAAGCCATT
GAGCTGTACA ACCCAACTGC CAACACTCTC GATTTAAGCC AGTATCAATT GCGCTTCTAT
TTTAATGGCA GCACCAATGT GGGCACAACT ATCGCCCTAA ACGGTACCTT AGCCGCAGGT
GCGACTTATG TGGTTGCTGA TAACGACGCA TCGGCGGATA TTCTGGCGGT GACGAATCAA
CAAAGCAGCG CGAGTTTTTT CAATGGTGAT GATGCCATTG TGCTGACCTA TCAAGACCAA
GTGATTGATA GCTTAGGTCA AGTGGGTGTC GATCCCGGCA GTGAGTGGGG CAGTAGTGAT
TTATCGACGC AGGACAATAC CCTGCGCCGC AATCCCGATC AGCTAATCGC CGATACCATT
ATTGATGATG CTGTCACCTT TAATACATGG TTAGGTTTTG CCAAAGACGA TATCTCGGAT
CTGGGTAAGT TCAGCGTGGG CACTCCCACC GATCCTGTTG AACCGCCACC GAGTTCATTA
GCCTGTGGTG AAGCCTCAAC GCCTATCCAT GCCCTACAAG GTTCGACCAA TGTCAGTCCG
TTAAACGGAC AAACCTTAGT GGTAGAAGCC ATAGTGGTGA GTAACCAAGA AGCTGGCCTA
AAGGGCATCT TCGTGCAAAT GGCCGACAAC GAAGCCGATA ACGATCCTCA AACCTCGGAA
GGGGTGTTTG TTTATACCGG TAATGCGCCT ACGGGTTACG TGGCGGGCGA CCGTGTACGC
TTAAAGGCTA AAGTCACTGA ATATCAAGGC TTAACGGAAC TGACTACCGT TGCCGATCAT
AAACTGTGCG CCGCCGGACA AACCCTACCC ACAGCCGCCG TGGTGACATT ACCTGTGAAT
TCGAGCGATG ACTTTGAACC ATTTGAAGGC ATGCGCGTCC GCTTTAGCCA AGATCTGGTC
GTGAACGAAG TATACAACTT GGGCCGCTAT GGTGAAATAT CACTCGGTAG CAGCCGTCAC
TTTATCGGGA CACAAGTCGC TGCGCCAGGT GCCGATGCCT TGGCCGTCAC TGCGGCCAAT
CTTAAAGACA GTATTTTACT CGACGATGGC CTAACGGCGC AGAACCCTGA TCCTGTGATT
TTCCCTGCGC CAGGTTTAAG CGCGTCGAAC ACTGTGCGTG TGGGCGATAA AGCCACGAGC
CTGACGGGCG TCATGCACTA TGGCTTTAAT CTTTATCGCA TTATGCCGAC TGAGCCAGTT
AATTTTGTGG CGGAAAATCC TCGTCCACAA TCGCCAGAGC TTGCCGAAGG TGGCAACCTG
AAAGTCGCTA GCTTTAACGT ACTGAACTAC TTTAATGGCG ATGGGCAGGG CGGTGGTTTC
CCTACTTCGC GCGGTGCCAA TACCCTGAGT GAGTTTGAGC GTCAAAAAGC GAAGATTGTC
AGCGCTATGG TGGGGATCAG TGCCGATGTG TTTGGTCTGA TGGAAATCGA GAACGATGGC
TTTGGCGCCA ACTCGGCGAT TGCCGATCTC GTGGCGGGCC TCAATGCCGC CGTGGGTGAA
AATCGTTATG CCTATGTTAT TCCAAAGGTC AATGGCAGCA ACTTAAGCGC GATCGGTACG
GATGCGATTA CCGTTGGTTT AATTTATCGC AGTGACAAAG TGAGCCCTCA GGGTGATGCG
CGTATTTTAT CGAGCGCGAA CTCTCCCTTA GATGACGCCG GGCAGCCGCA GTTCGACGAC
AGCAAAAATC GCCCTATGTT GACTCAAGCC TTCGCGCTAA ACGGCAGTGA GGAGAGTGTG
GTCGTTGCAG TTAATCACTT GAAATCTAAG GGCAGTGAGT GTGCTGGCGA TCCAGATATG
AACGATGGCC AAGGTAACTG CAATATTACC CGTACCCGCG CAGCAACGGC GGCGGGGCAG
TGGATTGCCG CGCAGTATCC AGAGCAAGGC GTACTGCTGA TTGGCGACTT AAACTCCTAT
GCCAAGGAAG ATCCGCTAAG CGCATTGGCT AACGCTGGCT TTAGCGAGTT GTTTGCAAAA
CTCGAAAAAG CCAATCCTTA TTCCTATGTA TTCTCGGGTG AATCGGGGCA GTTAGACCAT
GCGCTGGCCA ATGCTGCGTT AGTGGATAAA GTCCTAGATG TGACCGAGTG GCATATCAAT
ACCGACGAGC CGCGCGTGTT AGATTACAAC GAAGAGTTCA AGACGGCTGC GCAGGTGCAA
GACCTGTACG CCAGTGATGC TTATCGTTCA TCGGATCATG ATCCTGTGGT GATTTCACTC
CTGCTCGAAG CGGAAAACCT TGCTCCTGAA GCCAGCTTCA CTCAGGTTGT GAATGGTGCG
AGTGTGCAAT TTACCTCTAC TTCAACAGAT AGCGACGGCC AAATCGTCTC TACTGAGTGG
GACTTTGGTG ACAACACTCA AACCATGGGA GAGGCCGTAT CCCACACCTA TGCGCAAACT
GGTGATTATC TTGTGACGTT AACCGTGACC GATAATGACG GTTTAAGCCA TAGCAGCTCA
CAAATGGTGT CTGTCGTGGT TGAGAACGTG AAAAAGCCAC CCGTTGCGCA AATTCAACAC
ATCAATTTAT GGCTAGTCGA TATGTTTATT TCGACCAGCT ATGACACAGA CGGTGTGATC
AAGCAGCATA AGTGGAAGTT TGATAACGGT AGCCGTGCAA GTGGTCCTGT GGTGTTTCGT
CCAGCTCGCC GCGGACTCCA TACGGTCGAG TTAACCGTGA AAGACAATGA TAAATTAACG
GATACCACGT CACTGACGTT CCGTTAA
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| Protein sequence | MFNNKTLLAL AISSVCGFAH AADNLIISEY VEGSSNNKAI ELYNPTANTL DLSQYQLRFY
FNGSTNVGTT IALNGTLAAG ATYVVADNDA SADILAVTNQ QSSASFFNGD DAIVLTYQDQ
VIDSLGQVGV DPGSEWGSSD LSTQDNTLRR NPDQLIADTI IDDAVTFNTW LGFAKDDISD
LGKFSVGTPT DPVEPPPSSL ACGEASTPIH ALQGSTNVSP LNGQTLVVEA IVVSNQEAGL
KGIFVQMADN EADNDPQTSE GVFVYTGNAP TGYVAGDRVR LKAKVTEYQG LTELTTVADH
KLCAAGQTLP TAAVVTLPVN SSDDFEPFEG MRVRFSQDLV VNEVYNLGRY GEISLGSSRH
FIGTQVAAPG ADALAVTAAN LKDSILLDDG LTAQNPDPVI FPAPGLSASN TVRVGDKATS
LTGVMHYGFN LYRIMPTEPV NFVAENPRPQ SPELAEGGNL KVASFNVLNY FNGDGQGGGF
PTSRGANTLS EFERQKAKIV SAMVGISADV FGLMEIENDG FGANSAIADL VAGLNAAVGE
NRYAYVIPKV NGSNLSAIGT DAITVGLIYR SDKVSPQGDA RILSSANSPL DDAGQPQFDD
SKNRPMLTQA FALNGSEESV VVAVNHLKSK GSECAGDPDM NDGQGNCNIT RTRAATAAGQ
WIAAQYPEQG VLLIGDLNSY AKEDPLSALA NAGFSELFAK LEKANPYSYV FSGESGQLDH
ALANAALVDK VLDVTEWHIN TDEPRVLDYN EEFKTAAQVQ DLYASDAYRS SDHDPVVISL
LLEAENLAPE ASFTQVVNGA SVQFTSTSTD SDGQIVSTEW DFGDNTQTMG EAVSHTYAQT
GDYLVTLTVT DNDGLSHSSS QMVSVVVENV KKPPVAQIQH INLWLVDMFI STSYDTDGVI
KQHKWKFDNG SRASGPVVFR PARRGLHTVE LTVKDNDKLT DTTSLTFR
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