| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1506 |
|---|
| Symbol | |
|---|
| ID | 4252084 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1769175 |
|---|
| End bp | 1772603 |
|---|
| Gene Length | 3429 bp |
|---|
| Protein Length | 1142 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638118105 |
|---|
| Product | chromosome segregation protein SMC |
|---|
| Protein accession | YP_733641 |
|---|
| Protein GI | 113969848 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG1196] Chromosome segregation ATPases |
|---|
| TIGRFAM ID | [TIGR02168] chromosome segregation protein SMC, common bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00012681 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000000387349 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTAA AACAAATAAA ACTTGCCGGC TTTAAGTCGT TTGTCGATCC CACCAAGATT
CCGTTTTTAC AGGCATTAAG CGCCATTATT GGCCCAAATG GCTGCGGCAA GTCTAACGTG
ATTGACGCCG TGCGTTGGGT GTTGGGCGAA AGTTCGGCAA AGCATTTGCG CGGCGACTCC
ATGAGTGACG TGATTTTTAA CGGCTCCAGC GCCCGTAAAC CCGTGTCTGT GGCGGGCGTT
GAACTGGTGT TTGAAAATAA AGAGGGCCGC CTTGCGGGCC AATACGCCAG TTATGAAGAA
ATCTCGGTTA AACGTCAGGT GAGCCGTGAC GGTGAGTCTT GGTATTTCCT CAACGGCCAA
AAGTGTCGCC GTAAAGACAT CACTGATCTG TTTATGGGCA CCGGGCTTGG GCCGCGCAGT
TACGCCATTA TCGAACAGGG CACGATTTCA CGTTTAATCG AATCTAAACC CCAAGATTTA
CGGACTTTTA TTGAAGAAGC GGCGGGGATT TCCCGCTATA AAGAACGGCG GCGTGAAACG
GAAAACCGTA TCCGCCATAC CCGCGAAAAC TTGGAGCGTT TAGGGGATAT TCGCAGCGAG
TTAGCCAAAC AACTCGAAAA ACTCAGTCAG CAGGCCAAGG CGGCGAAGCA ATATCGTGAG
CTGAAGCAAG CTGAGCGTAA AACCCACGCC GAGCTGCTGG TGATGCGCTA TCAAGAGCTG
CAGAGCCAAA TGGCGAGTCT ATCGGAGCAG ATTAGCTCGC TCGAGCTGCA ACAAGCGGCG
GCCCAGTCCT TAGCGCAAAC TGGCGAGTTA GAAAGCACCG AGTTGCAACT CACACTTTCG
CACTTAGCCG AACAGGAGCA GCAGGCGGTC GAAGCCTATT ACCTGACCGG TACCGAAATC
GCCAAGCTTG AACAACAGTT ACAGAGCCAA AAGCTGCGCG ATGCCCAGTT GCATAATCAG
CTTGAGCAGT TGAGTGAGCA AATCATTCAA AACCAAGCTA AATTAGCCGC TTACCAAGCC
AGTTTTCAAG CGCTTGAGGC GGAGCTTAGC CAACTTGGGC CGCAACATGA GTTGCAGCAA
GAAATGCTCG ATGAGCTGCA AGCCCAGTGG GAAATGAGCG TTTCGCGCAG TGAGGCGCAA
AGTGAAAGCG CCAGAGTGCT AGCGGCGGCC GTCGCTCAGC ATAAGCTGCA ATTAGAGTTA
CACCGCAGCA AACTGGCTCA TCAGCAACAA TTAAATGCCC ATAAAACCCT GCTACACCAA
GAGCAACAAC AAGAGCTGGC CTCGCTTAAT GCGCATGCCC TCGAAGATAG CAGCGCATCA
CTTAATGATG AGATTGCCCA GTTAGAACAA GCATTAGCTG AACAAGTTGA AATCAATCAA
GAGTTTGAAT CCACTCTGGC TGCCGATACT CATGCGTTAG ATTTGGCCCG CGGTGAGTTT
GAGCAATTAT CACAGCGTTT AACCTCGATG CGGGCACGTT TCGAACTGGT TGAACAATGG
CTTGCGAAAC AAGAAGAGTT AAGTGATAAG CCGCAGCTGT GGCAAAGCAT TCAAGTGGAA
AACGGCTGGG AAGCCGCCGC CGAACTGGCG CTGCAGGGAT TGATGACGCT GCCTGTGGGC
GTTAACGCCA ATGAAATAGG CTTTTATGCC GATGCGGCCT TGGCGGCGGA CGCGCATCTC
GATGGCTCTC CCATCTTAGG TGCCAAATTG AACCTTGCCC CTTGGCTTAA GGGACTCAAA
TGGGCCGATA ATTTGGCCAG CGCACAAGCA CTGCTGCCGA GCTTGGCGGC CGATGAGCGA
ATCGTGACCG CCGACGGTTA CTTGCTCGGC AAAGGTTTTT TGATTGCTAA ACAAGACAAT
AGCCAATCCT TAGTGCAATT GAGTAAAGAG CAAACCGAGC TGAGCGAGGC CATCGCTGAT
TGCGAGCAGG CAAAAGCCAT ACAGCAGGCA AAGCTCGATG AATTAGCGCA GCAATTAGCC
CAAGTGCGTG ACAGTTTAAG CCAAGGCACT AAACGCTTAC ACCAGTTGCA GCTCGATAAG
GCCACCAAAT CAACCCAGCT TAATAACGCA GAGATCCAGG CCAAGCAGCG CGAAGCGAAA
CGCGGGCAAC TCGCAGAAAC CCTTGCCCGA ACCCACGCCG AGTTAGCCGA GCTTGCCGAG
CAGTTAATAT TGCTTGCGGA GCAAGAGGAT GAGCTGGCTG AGGCGCTAGA GGTAAGCCTT
GAGCAGCAAC AGCAACAAAG CCAAGATGCG CAAGGGGATA TGGCCCGCCA TCAAGCCCTG
AAGGCACAAA TTGGCGATGC CGAGCGGCGC TTAACGAGCC TCAATGCCAG TCTGCAATCG
ATCGCTACTC GGATGGCGGT GAGCACAGAA CAAATTGAAT TACAGCGTGT ACGTGTCAGT
GAATTAGTCC ACTCAAAGGA AACACTGTCA GCCCAACTTG CCAACGTCGC GGCACAAGAG
GGCGATCAGC AAACGGCGCA GCTCAGCGAA CAACTGGCGC AATTACTCAA TCAACAGCAG
AGTCAGCAAC AGGCACTTAA AAGCCTCAGG TCACAACAAA GTTCGCTCAC TGAAACGCTA
AACAGTATAG GATTAAAGCA AAAACAAGAG CTTGGTAAGC TTGAGGGCTT GACTCAAAGC
CTAAGCACGT TAAAGTTACG TCGTGAGGGA TTAAAAGGGC AGGCCGATAG CCAATTAGCG
GCACTGTCAG AGCAACAAAT TGTGCTCGCC CAGATTGTCG ATTCCCTGCC TGCGGATGGG
CATCCCGACA AGTGGCAGCG TGATTTGGAT CAGATCCGCC AAAAAATTAT TCGCTTAGGA
GCGATAAACC TCGCGGCGAT CGAAGAATAT GAACAACAAA GTGAGAGAAA ATCCTATTTG
GATCATCAAG ATGAAGATCT AAATAACGGT CTGGCAACCC TAGAGGAAGC CATTCGGAAA
ATCGATAAGG AGACCCGCAC TCGCTTTAAG ACCACATTTG ATGCGGTAAA CGAAGATCTC
GGGCGTTTAT TCCCTAAGGT ATTCGGTGGC GGACGCGCAT ATTTAGCGCT GACGGAAGAC
GATTTATTAG AAACGGGCGT GACCATCATG GCCCAACCCC CAGGTAAGAA GAACAGTACA
ATCCATCTTC TTTCCGGTGG TGAAAAAGCC CTAACGGCTT TATCATTGGT ATTCGCGATT
TTCAGGTTGA ATCCAGCTCC CTTCTGTATG TTAGACGAAG TGGATGCGCC CTTAGACGAT
GCCAACGTAG AACGATTCTG TCGATTATTG AAGGAAATGT CGCAGAGCGT ACAGTTTATC
TATATCAGCC ATAACAAAAT TACGATGGAG ATGGCTGATC AACTTATCGG TGTGACTATG
CATGAGCCGG GTGTCTCTCG TATAGTCGCA GTAGATTTAG AGCAAGCGGT GGCGATGGCC
GACGCTTGA
|
|---|
| Protein sequence | MRLKQIKLAG FKSFVDPTKI PFLQALSAII GPNGCGKSNV IDAVRWVLGE SSAKHLRGDS
MSDVIFNGSS ARKPVSVAGV ELVFENKEGR LAGQYASYEE ISVKRQVSRD GESWYFLNGQ
KCRRKDITDL FMGTGLGPRS YAIIEQGTIS RLIESKPQDL RTFIEEAAGI SRYKERRRET
ENRIRHTREN LERLGDIRSE LAKQLEKLSQ QAKAAKQYRE LKQAERKTHA ELLVMRYQEL
QSQMASLSEQ ISSLELQQAA AQSLAQTGEL ESTELQLTLS HLAEQEQQAV EAYYLTGTEI
AKLEQQLQSQ KLRDAQLHNQ LEQLSEQIIQ NQAKLAAYQA SFQALEAELS QLGPQHELQQ
EMLDELQAQW EMSVSRSEAQ SESARVLAAA VAQHKLQLEL HRSKLAHQQQ LNAHKTLLHQ
EQQQELASLN AHALEDSSAS LNDEIAQLEQ ALAEQVEINQ EFESTLAADT HALDLARGEF
EQLSQRLTSM RARFELVEQW LAKQEELSDK PQLWQSIQVE NGWEAAAELA LQGLMTLPVG
VNANEIGFYA DAALAADAHL DGSPILGAKL NLAPWLKGLK WADNLASAQA LLPSLAADER
IVTADGYLLG KGFLIAKQDN SQSLVQLSKE QTELSEAIAD CEQAKAIQQA KLDELAQQLA
QVRDSLSQGT KRLHQLQLDK ATKSTQLNNA EIQAKQREAK RGQLAETLAR THAELAELAE
QLILLAEQED ELAEALEVSL EQQQQQSQDA QGDMARHQAL KAQIGDAERR LTSLNASLQS
IATRMAVSTE QIELQRVRVS ELVHSKETLS AQLANVAAQE GDQQTAQLSE QLAQLLNQQQ
SQQQALKSLR SQQSSLTETL NSIGLKQKQE LGKLEGLTQS LSTLKLRREG LKGQADSQLA
ALSEQQIVLA QIVDSLPADG HPDKWQRDLD QIRQKIIRLG AINLAAIEEY EQQSERKSYL
DHQDEDLNNG LATLEEAIRK IDKETRTRFK TTFDAVNEDL GRLFPKVFGG GRAYLALTED
DLLETGVTIM AQPPGKKNST IHLLSGGEKA LTALSLVFAI FRLNPAPFCM LDEVDAPLDD
ANVERFCRLL KEMSQSVQFI YISHNKITME MADQLIGVTM HEPGVSRIVA VDLEQAVAMA
DA
|
|---|
| |