Gene Shewmr4_1481 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1481 
Symbol 
ID4252059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand+ 
Start bp1736645 
End bp1737307 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content47% 
IMG OID638118080 
Productsignal peptidase I 
Protein accessionYP_733616 
Protein GI113969823 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0681] Signal peptidase I 
TIGRFAM ID[TIGR02227] signal peptidase I, bacterial type 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTAAAA AACATAGAAC ATTACTTAGA GATAATCGCT CCATTTTATT GTTTATCAGC 
CTAATGCTGG TATTCAGGAG CGCGGTAGCT GATTGGAATA CAGTGCCGAC AGGTTCTATG 
TTGCCGACGA TTGTCGAGGG CGACCGCATT CTGGTGAATA AGATGGCTTA CGATATCAGA 
GTGCCATTTA CCCATATCCC ACTCGTTAAA CTTGCGGACC CTACACGTGG GGATATTATC 
GTGTTCGACT CTAAAAAAGC CGATAAAAAG CTGATTAAAC GGGTGATCGC CGTACCCGGT 
GATACTGTGA TGATGCGGGA TAATCGCTTG TATTTAAATG ACAAACCACT CGCATATACA 
CAGCAAACAT TAAGTGCCTA TGCGCCGGCG AATGTCACCG AGTGGCAGGA GGATCTACTC 
GGCATAGCGC ACAGTATTCG CCTCAATCCG CAGCCTTCGC AGCTGGCTAA TTTTGGCCCA 
GTTACGGTTC CTGATAACCA GTATTTGGCG CTAGGGGACA ATCGAGATAA CAGTGCCGAT 
TCAAGAGTCA TAGGTTTTGT GCCAAGAGAG GAGATTGTTG GCCGCTCAAG CTCCGTAGTC 
TTCTCATTGG ATTACAACGA TTATTACATG CCGCGGCCTG AGCGCATGAT GCGCGCGTTC 
TAA
 
Protein sequence
MFKKHRTLLR DNRSILLFIS LMLVFRSAVA DWNTVPTGSM LPTIVEGDRI LVNKMAYDIR 
VPFTHIPLVK LADPTRGDII VFDSKKADKK LIKRVIAVPG DTVMMRDNRL YLNDKPLAYT 
QQTLSAYAPA NVTEWQEDLL GIAHSIRLNP QPSQLANFGP VTVPDNQYLA LGDNRDNSAD 
SRVIGFVPRE EIVGRSSSVV FSLDYNDYYM PRPERMMRAF