| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1211 |
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| Symbol | |
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| ID | 4251250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 1411270 |
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| End bp | 1413006 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638117796 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_733348 |
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| Protein GI | 113969555 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGTTA AGCGACTCAC CAGTCTAAAA CATAAAATCG CGCTGGCCTT ATACATCATC
CTAGGCATGG CACTGCTCAA TGGCATTATC GCCATCCTAT TGTCACAACA GTTAAGAACC
AAAATAGAGC AATTGGTCAA CAGCGATGTC GTCAAAGTCA CCACTGCACT GCAATTAGCC
AAGAATAGCG AAAGACTGCA AATCATCACC ACCGAACTGA ATCACTATGA CACTGAGCAG
CAGCGACTCA GCTTACTCCA GGAGCTAACC CATCAATGGG AGCAACTGTT ACAAGACACA
AAAGTCCTAT TGAGCCTCGA AAACACACCC AATATACATG AGACACTCAA TAGAACGATT
GATACCCAGC TGTACTTTCA GCAGCAACTG CCTCTGCTCG ATACGCTAAC CGACAGCGCA
TTACAGGCCA AATTACAGGC GCAAAATATT CAGACGAACC TCGCGGGTAT GTCATCGGCC
TTTTCCGACG AGATGCAAGC GCAACTCGAC CTAAGCCACA AACGTAATGC TCAACTTATT
GCACAGCACA ATCTCAGCGG GATAAGCTAT AACCTCAATG AACATCAGAA AATCTCTGAC
TATTTGCATC AAGGTGAGCA CCTATTTGTA CTGCTCAATG AAGTCAAAAA TACCCAAACG
AGCATAGGCC TCAACCAGCT TCAACGGGAT GCCATGCGTC TTTTTATCGA AATGGAAGCC
GTCGCCACCT CAATACCGCC AGATAATACG ATTTATCTCA ACTGGCTATC TCAAATAAAA
CAAAACATGG TTGGCAATGA CAATCTGTTT GAACTGTCCC GTAATGCCTT AAAAAGCACT
CAAATTGCCA ATGCGCATTT TGGCTATCAA GCCAATGCAG CGAGGGAGAT CGCCAGCTTT
ACCCAAGTGT TAGTTAATCA TGTGGAAGAC GAGATCCAAG TTGCAGGAAC GAACCTTAAC
AGCGACAGCA CCGCCTTTGT CATCCTGATC TTTTGTGGCG GCATAGTGTA TTGCTTCTTT
ATCTGGGTGA TCAGTTGGCA TTTTATCGCC AAGGGCATTA TCAAACCCGT TATCGCTACT
CGGGATGCAA TGAATGCCAT CGCTAACGAA AGACTCGACA CCGAAATGCC CATTACCGAT
AACTTAGAGC TACAACAAAT GGTGAGCTCG CTCGAAACCC TAAAAACCTA CGCCGCCCAA
GTGAAAGCCA TGGCGGAAAC CGATGGCTTA ACCGGCTGCT ATAACCGCCG CTACCTCGAC
AGCCAAATCA AGAAGGAATT GAGTTACGCC AACGATCACA ATATGCCCCT CAGTGTTGTG
ATGTTCGATA TAGATAACTT TAAAGAATTC AATGATAAAT ATGGTCATGT CGCTGGCGAT
CAGTGCTTAA AACAAGTCGT CGATGCCGCA AAATCGATTC TGCAACGCCC AACCGATATC
CTCGCCCGCT ATGGCGGTGA AGAGTTTACC TTACTACTGC CCTCGAGCCA CTGTGAAGAC
GCCTATAGAA TTGCCGAGCG CCTGCGCGAA ACCATCATGG AATTAGCCAT CCCTCACCAG
AGCTCGTCAC ACTCGGGAGT AGTGACCATT AGTTTAGGGG TCGCCTGCTG GCAACCAGCA
CAGTCACTCG ATGCCAATCT AGTTATCTCT GATGCGGACG AAGCCCTGTA TCAGGCCAAA
CAAGCCGGAC GCAATCGCAC AATAGCCTTG AGACACCCTG AATTTCGTAA CCTATAA
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| Protein sequence | MNVKRLTSLK HKIALALYII LGMALLNGII AILLSQQLRT KIEQLVNSDV VKVTTALQLA
KNSERLQIIT TELNHYDTEQ QRLSLLQELT HQWEQLLQDT KVLLSLENTP NIHETLNRTI
DTQLYFQQQL PLLDTLTDSA LQAKLQAQNI QTNLAGMSSA FSDEMQAQLD LSHKRNAQLI
AQHNLSGISY NLNEHQKISD YLHQGEHLFV LLNEVKNTQT SIGLNQLQRD AMRLFIEMEA
VATSIPPDNT IYLNWLSQIK QNMVGNDNLF ELSRNALKST QIANAHFGYQ ANAAREIASF
TQVLVNHVED EIQVAGTNLN SDSTAFVILI FCGGIVYCFF IWVISWHFIA KGIIKPVIAT
RDAMNAIANE RLDTEMPITD NLELQQMVSS LETLKTYAAQ VKAMAETDGL TGCYNRRYLD
SQIKKELSYA NDHNMPLSVV MFDIDNFKEF NDKYGHVAGD QCLKQVVDAA KSILQRPTDI
LARYGGEEFT LLLPSSHCED AYRIAERLRE TIMELAIPHQ SSSHSGVVTI SLGVACWQPA
QSLDANLVIS DADEALYQAK QAGRNRTIAL RHPEFRNL
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