Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1142 |
Symbol | |
ID | 4251810 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1343063 |
End bp | 1343941 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638117723 |
Product | extracellular solute-binding protein |
Protein accession | YP_733279 |
Protein GI | 113969486 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGCCTA GGTTCGTTTT TCAGTTTAGC CATATCTTGC TGTTATGTAT TTTTATTTTC CCCACTTTTG GTGCTCCTTC TGAGGCAGTA GTATCTGTCT GTTTAAATCC CCTGAGAGTC GGTTATAACG ATTGGCCGCC CTATGCCTGG CGAGATCAGC AGGGTGAAGC GCAGGGGCTT GATGTGGAGC TGCTTCGCGC CTTTGCCGAA CACTTAGGTT GTGAGGTGAT TTTTATCAAT GTGCCCGCTA AGCGCTCACA CCAAATGCTG AAAAGTGGTT CCTTAGACAT GATGATGGGC GCTACCAAAA CGGCCAAACG TGAGGAGTAT GCCTTATTTT CAGCCGCCTA CCGTGATGAA GAAGTGCGTC TATTTGTGTT GGACGAGAAA AAAGACAAGA TCCAGTTGAC CCAATGGCAG GATATTTTCA GCCAAAAACT ACGTTTATTA GTGCCCATCA GTGGATGGTA TGGCGTGGAT TATGAGCAGA CGCGGCAGCG CTTAGAACAA GAGCACCTGT TGATACTCAG TCCCGATGCC GACAAATCGG TGCAAATGCT TACTTATGGC CGAGCGGATC TGATTATCGG TGATTCCATG GCTATGCCTT ATATAGCCAG TCAGCATCAA GGGGTGAGGT TATCGTCACT GAAACCTGTT TTGGATCGTA ATCAAATCCA CTTAATGTTC AGCAAGCAAA CATCCTCGTC ATCGCGAGTG AAGCAATTTA ATGTCGCCAT CGAGGCGCTA AGCGCCAATG GTGAGATTGC CCGAATTGTT TACAAGTGGC AGCAATTTTC GCTGGCGCAA CAAACCAAAA TGAGTCATCA GTTTAATTCA TTCTCTTGGC AATATGCTGA CTTGCTCACC ATCGAATGA
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Protein sequence | MVPRFVFQFS HILLLCIFIF PTFGAPSEAV VSVCLNPLRV GYNDWPPYAW RDQQGEAQGL DVELLRAFAE HLGCEVIFIN VPAKRSHQML KSGSLDMMMG ATKTAKREEY ALFSAAYRDE EVRLFVLDEK KDKIQLTQWQ DIFSQKLRLL VPISGWYGVD YEQTRQRLEQ EHLLILSPDA DKSVQMLTYG RADLIIGDSM AMPYIASQHQ GVRLSSLKPV LDRNQIHLMF SKQTSSSSRV KQFNVAIEAL SANGEIARIV YKWQQFSLAQ QTKMSHQFNS FSWQYADLLT IE
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