Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1036 |
Symbol | |
ID | 4251109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1209134 |
End bp | 1209973 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638117609 |
Product | nucleoside-specific channel-forming protein, Tsx |
Protein accession | YP_733173 |
Protein GI | 113969380 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3248] Nucleoside-binding outer membrane protein |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000103481 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000147865 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAAAAACG TTAAAACTTT AGCTTTAGCT GCTACAGCAG TAGCTGCAAT CTCTGGTAAC GCATTTGCTG CAGATCGTAC AGACCTTCAC GGTTCTGACT ACAAGTGGAT GCAGTTCAAC GCTATGTACT CTATCGGCGA AAAGCCTGAT AACCCAGCTT CTGGCGACCA ACACAACTAC TTAGAAATGG AGTTCGGCGG CCGCTCTGGT ATTTTCGATC TCTATGGTTA TGTTGACGTA TTCAACTTAG CAAACGAGAG CAGCAAAGAC GGTGACAAGA ACCCAGGTTC AGGCACCAGC AAACTGTTCA TGAAATTTGC TCCACGTGTT TCTATCGATG CATTAACGGG CAAAGATTTA TCTTTCGGTC CAATCCAAGA AGTTTACTTC TCTACTCTGT TCAACTGGGA CGGTCTGAAC GGTGAAGGCG TTAACTCTAC TTTCTGGGGT GTTGGTGCTG ACGTAAACGT GCCTTGGTTA GGCAAAACAG GTATGAACCT GTACGGTTAC TACGACATGA ACGCGAAAGA GTGGAACGGT TACCAATTCT CTGCTAACTG GTTCAAGCCT TTCTACTTCT TCGACAACAA GAGCTTCCTG TCATTCCAAG GTTATATCGA TTACCAATTC GGTGCTGACG AAGACAAGAC TGCTTTCGTA CCAAAAACCT CTAACGGTGG TAACATCTTC TTCGGTCTAT ACTGGCACTC AGATCGTTAC GCTCTGGGCT ATGGCCTGAA AGGCTTCAAA GACGTTTACC TGTTAGAAGA CGGTGCTGGT GCACTAGCTC TAGAATCAAC AGGTTGGTCT CACTACCTGT CAGCTACTTA CAAGTTCTAA
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Protein sequence | MKNVKTLALA ATAVAAISGN AFAADRTDLH GSDYKWMQFN AMYSIGEKPD NPASGDQHNY LEMEFGGRSG IFDLYGYVDV FNLANESSKD GDKNPGSGTS KLFMKFAPRV SIDALTGKDL SFGPIQEVYF STLFNWDGLN GEGVNSTFWG VGADVNVPWL GKTGMNLYGY YDMNAKEWNG YQFSANWFKP FYFFDNKSFL SFQGYIDYQF GADEDKTAFV PKTSNGGNIF FGLYWHSDRY ALGYGLKGFK DVYLLEDGAG ALALESTGWS HYLSATYKF
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