Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0825 |
Symbol | |
ID | 4250757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 964562 |
End bp | 968860 |
Gene Length | 4299 bp |
Protein Length | 1432 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 638117388 |
Product | formate dehydrogenase, alpha subunit |
Protein accession | YP_732962 |
Protein GI | 113969169 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases [COG3383] Uncharacterized anaerobic dehydrogenase |
TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00541451 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATAGAAC TTCGAATCGA TAATCAGATA GTCACGGCCG AGCCGAACGA TAACCTACTT CGGGCAGCCA GTAAGGCTGG CATAGCAATT CCGAGTCTGT GCGATCCAAC AGACGCCACA CGGCAATTGG GCGCGGCTCC CCATGCCGAT AAACAGGACT GCAACCTCTG CTTAGTGCAA ATCGAAAATA CCGATGCCAG CCTGCGCTGC GTTAAAGCCT GTGAAACGCC CGCCGAAGCG GGCATGAAGG TCATCACCCA ATCGGCATAT TTAACCAAAC AGCGCCAAGC TGCATTGAGC ACAATTTTAA GTGACCACTT TGCCGATTGT GAGGCGCCTT GCCAACAGGC CTGCCCCGCG GGTGTCGATG TGCAAAGTTA CCTGTACCAC ATTGCCCAAG GCGACCATAG CCAAGCCATT AAAGTCATTA AAGATACCCT GCCGCTGCCG CTGTCGATTG GCCGAGTCTG CCCCGCGTTT TGCGAGACTG AATGCCGCCG CGGCCTCGTC GATGACCCCA TTGCTATTCG TCAACTCAAG CGCCACGCCG CCGATTTAGA CTTGGCCGAC GATGAACAAG GTGGCAGTTA TCAACCACCA CGCCTCGCAG ATACGGGCAA AAAAATTGCC ATTATTGGCG CGGGCCCCGC AGGCTTAAGT GCCGGTTATT ACCTGTCAAA CCAAGGGCAT AGTGTTGAGA TTTTTGAAGC CATGCCCAAG GCGGGCGGCT GGCTGCGCTA CGGGATCCCC GAATACCGTT TACCCAAGGC AATTCTCGAT AAAGAAATAG AGCTGCTATG CCGCAATGGG TTAACCATTC ATACGGATAC TCGCCTCGGC CATGAAATTC ATTTAGCCCA ACTGGTCGCC GATTTCGATG CGGTGTGCCT TGCCATCGGC GCCCAAAAGG CGGTGCCGAT GAACTACAAA GGCTCAGAAC TTGCGGGCTG TTACCTGGGG GTGGGTTTTC TTAAGGAACA TTGCCTCGAC AAACAATTGA AGTTGGGCAA AAAAGTCGCC GTGATTGGTG GTGGCAACAC CGCCATCGAC TGCGCCCGCA CCGCCGTGCG CGAAGGCTGC GATGTCACCT TAATCTACCG CCGTACCCGC GCCGAAATGC CCGCCGAAGC CTACGAAGTA CATGAGGCCG AAGTTGAAGG CGTCAAATTC CATTTCTTAA CCAATCCCAT TGAAAATCAT AGCGATGCCA ATGGACAGGT AGAAGCTGTC ACCTTCAGCA AAATGGCACT CGGCGAAGCC GATGCCTCGG GCAGACGCGC GCCCGTGGAC ACGGGGGAAA CCTTTACCGA GGCCTTCGAT ACCGTTATCG CCGCCGTATC CCAAGCGCCA GATCTGAGTT TTATGCAAGA TCCTATGGGG CAACTCAGCC ATGGCGAGCT GGCGCTGAGC CGCTGGAACA CCCTGATAGG CTGCGAGCAA ACCATGTCAT CGGGTGTAGA AAAACTGTTT GTGATGGGCG ATGCCCGCAG AGGTCCTGCC ACCGCCGTAG CCGCCATTGG CGATGGCCGT AAAGCGGCAA TCGCTATTGA TAAGATGCTA AAAATCGGCC TTAGCTGCGA TTTACATGCC CATGAGTTTA ACTCGGTCAA AACCATACCA AGCGCCCTCA TTCCAAACGC TCTTAAGCAA ACCGAAACAA GCTCAAAAGC AGGGTCAACG CATTATCCCC ATACGCCGCG TCAGCCCCGC TTGAAGATGC CCGAACTCAC GGCGCTGCAA CGGCTACTGA ATTACAGTGA AGTCGAGTTA GGTTTTCCCG CAGATGCCGC CATGCAAGAG GCGGCGCGCT GTCTCGAGTG CGCCTGTCAG GCCAATACTG ACTGTAAGCT TAGGGATTAC GCCACGGATT ATGGTGTCGA GGCCAAAAGC TTAGCCACTG AAAATGCACG GCATTTCAGT GTTGATAAGA GCGCACCCTT TATTCAATTC GATGCTAATC GCTGTATTAG CTGCGGTAAA TGCGTCGATG TGTGTCAACA GCAGAGTGGC CACTGCGCGA TTCAATTTAG CCAAGATTCC TATCAGGCGC TGCCGCAGGA AATGACTCAA CACATGGAGC GCCGCGCGCC GAGAGTCGGC TTTAGTGCGA GCATGGCCGA TAGCCTCTGT GTGCAATGTG GTAACTGTGT ACAGGTTTGT CCGACGGGCG CACTGGTCGA TGCCCGAGAT AAACGCCAAG GCGATAGCAC AGAATTAAAA ACTGCCTCGA CGATTTGTAC TTACTGCGGC GTTGGCTGTC GCCTCGACCT TAAAATCGAC TCCAACGCCA ATCGCATTCG TCATATCGAA GGCAATAAGG ACTCGGTCGT TAACCAAGGC ATGCTGTGTG TTAAGGGACG TTTTGGCTTC GATTTTATTC ACAGCGACAA ACGTCTCACT ACGCCACTAA TACGTAAAAA CGGTGAGCTG CAACCGAGTA GTTGGCCCGA AGCCATTGCC TATGTGGCAA AACGCTTAAC CGAGATAAAA CAAAAAGATG GCAGCAATGC TCTCGCCAGT CTCGCCTCGG CCAAGGCCAC CAACGAAGAT AACTTTGTGC TGCAAAAGTT TGTTCGCAGT GTTCTTGGCA CCAACAATAT TGATCACTGC GCCCGCCTAT GCCACTCATC GACGGTAACG GGTTTGCAGC AGAGTATTGG TAGCGGTGCC ATGACCAATG ATATTCCGAG CATCAAGGAC TCGGACGTCA TCTTTATCTT AGGCTCAGAC ACCACCTGCG CCCATCCGAT TATCGCCTCT AAAATTCAAC AGGCAGTGAT GCAGCACGGC GCGCGTTTGC TGGTTGCCGA TCCGAAGCGG GTTGGCATTG CCGAAAAGGC CGAGCTGTAT GTCGCCCACA GACCGGGGAC GGATGTGATG CTGCTCAACG CCATTATGGC AGAAATTATT CGTAACGATT GGCAGGATAA AGACTATATC GCCGAGCGTA CCGAAGGCAT TGTGGCCCTC TATGCGGAGT TATCCAAGGA GGATTACTCC CTCGAAAACG CAGCACTCAT CACGGGCGTA AAAGCCGAAG ACATTGCCCG CCTCGCGCGC ACCATAGGCA CGGCGCAAAA GACCGCGGTT TATTACGCCA TGGGTATCAC TCAGCATACG ACTGGGCACG ATAACGTCAC GGCTATCTCT AATTTGCAGC TACTTTGCGG CAATATTGGT GTGTCAGGCG CGGGGATTAA CCCACTTCGC GGCCAGAGTA ATGTCCAAGG TGCCTGCGAC ATGGGCGCGC TACCCAACTA TTTTACCGGT TACCAAAAGG TCACGGATAT TCATGCCAGA ATGCGCTTTG AAGACCACTG GCAAACGCCG TTATCGGAGG AGATTGGCGT CACCGCAACC CATATGATGC ATGATATTGC CAAGGGCAAC ATTAAAGCCT TGTATGTGAT GGGTGAGAAT CCCGTGCTCA GCGACCCCGA CCAAGCCCAT GTACTTAATG CCTTGAGCAA AGTCGAGTTT TTGGTGGTGC AGGATATCTT TTTAACCGAG ACGGCCGAGC TTGCCCATGT GGTCTTGCCC GCCGCCGCAT TCGTGGAAAA ACGCGGTCAC TTTACCAATA CCGAGCGTCG GGTGCAGCGA CTCGAGCAAG CGCTCGCCTC ACCGGGTGAA GCCTTACCCG ATTGGCAGAT AGTGCAGGCC GTCGCTAATG CCATGGGCGC TAACTGGGAT TATGCCAACG AAGAAGCCAT TTGGTGCGAG ATCAACGAAC TTACTCCGCA GTATCGCGGT ATTCGCTGGG ACAGATTAAG TGCCAATGCC GAAGGTCAAA TCTCTCAAGG GATTCAATGG CCCTGTCCAG ATGAAACCCA TCCCGGGACG CCGATTATGC ACCAAAGCCA ATTCACTCGA GGCTTAGGCT TATTTACCCC CGTTAGTTAT CGCCTGCCTG CAGAGATGCC CTGCAACGAG TATCCGCTGA CGCTATCGAC GGGGCGGCTA TTGGAGCAAT TCCACACGGG CACACTCACC CGTAAAACAC CAGGGCTGGA TCTACTCGGC GCGCCTAAGG TGATGATTTC TGTCTATGAT GCGGAGCAAC TGGGGATCCA TAACGGCGAT AAACTTCGCC TTACCACCCG CCGCGGAGAG ATTGAAATCG ATGCCTTTGT GACTAAACGC GCCCAAGCGG GCGTGCTGTT CCTGCCGTTC CATTTTGTGG AGGCCGCAGC GAATAAGCTC ACGATCAATG CCTTAGATCC TGTGGCTTAT ATTCCCGAAT ATAAGGTCTG CGCGGTCAGG GCTGAAAAGG TGACAACAAG CGTGAGTGAA CCAGCCTAA
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Protein sequence | MIELRIDNQI VTAEPNDNLL RAASKAGIAI PSLCDPTDAT RQLGAAPHAD KQDCNLCLVQ IENTDASLRC VKACETPAEA GMKVITQSAY LTKQRQAALS TILSDHFADC EAPCQQACPA GVDVQSYLYH IAQGDHSQAI KVIKDTLPLP LSIGRVCPAF CETECRRGLV DDPIAIRQLK RHAADLDLAD DEQGGSYQPP RLADTGKKIA IIGAGPAGLS AGYYLSNQGH SVEIFEAMPK AGGWLRYGIP EYRLPKAILD KEIELLCRNG LTIHTDTRLG HEIHLAQLVA DFDAVCLAIG AQKAVPMNYK GSELAGCYLG VGFLKEHCLD KQLKLGKKVA VIGGGNTAID CARTAVREGC DVTLIYRRTR AEMPAEAYEV HEAEVEGVKF HFLTNPIENH SDANGQVEAV TFSKMALGEA DASGRRAPVD TGETFTEAFD TVIAAVSQAP DLSFMQDPMG QLSHGELALS RWNTLIGCEQ TMSSGVEKLF VMGDARRGPA TAVAAIGDGR KAAIAIDKML KIGLSCDLHA HEFNSVKTIP SALIPNALKQ TETSSKAGST HYPHTPRQPR LKMPELTALQ RLLNYSEVEL GFPADAAMQE AARCLECACQ ANTDCKLRDY ATDYGVEAKS LATENARHFS VDKSAPFIQF DANRCISCGK CVDVCQQQSG HCAIQFSQDS YQALPQEMTQ HMERRAPRVG FSASMADSLC VQCGNCVQVC PTGALVDARD KRQGDSTELK TASTICTYCG VGCRLDLKID SNANRIRHIE GNKDSVVNQG MLCVKGRFGF DFIHSDKRLT TPLIRKNGEL QPSSWPEAIA YVAKRLTEIK QKDGSNALAS LASAKATNED NFVLQKFVRS VLGTNNIDHC ARLCHSSTVT GLQQSIGSGA MTNDIPSIKD SDVIFILGSD TTCAHPIIAS KIQQAVMQHG ARLLVADPKR VGIAEKAELY VAHRPGTDVM LLNAIMAEII RNDWQDKDYI AERTEGIVAL YAELSKEDYS LENAALITGV KAEDIARLAR TIGTAQKTAV YYAMGITQHT TGHDNVTAIS NLQLLCGNIG VSGAGINPLR GQSNVQGACD MGALPNYFTG YQKVTDIHAR MRFEDHWQTP LSEEIGVTAT HMMHDIAKGN IKALYVMGEN PVLSDPDQAH VLNALSKVEF LVVQDIFLTE TAELAHVVLP AAAFVEKRGH FTNTERRVQR LEQALASPGE ALPDWQIVQA VANAMGANWD YANEEAIWCE INELTPQYRG IRWDRLSANA EGQISQGIQW PCPDETHPGT PIMHQSQFTR GLGLFTPVSY RLPAEMPCNE YPLTLSTGRL LEQFHTGTLT RKTPGLDLLG APKVMISVYD AEQLGIHNGD KLRLTTRRGE IEIDAFVTKR AQAGVLFLPF HFVEAAANKL TINALDPVAY IPEYKVCAVR AEKVTTSVSE PA
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