| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0790 |
|---|
| Symbol | |
|---|
| ID | 4251512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 921040 |
|---|
| End bp | 922302 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638117353 |
|---|
| Product | ATP-dependent RNA helicase SrmB |
|---|
| Protein accession | YP_732927 |
|---|
| Protein GI | 113969134 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTTG AAGATTTTCA GCTTGACCCT AGCTTATTAG AGTCACTTAA AGCCATGGGG
CACCTGTCGC CCACCACCAT CCAGCAAGAA ACCCTGCCGC ACGCCTTAGA GCAGCGGGAT
ATTTTGGCGC GCGCCCCGAC GGGTACAGGT AAAACCGCCA GTTTCTTATT GCCAGCGCTG
CAACACTTAA TCGACTTCCC CCGCCGTTAT TCGGGCCAAG CGCGCGTGTT GATCCTCACC
CCGACTCGAG AGTTGGCGAG TCAAATTCAC CGCTATGCCT GCCATTTAGC CACTGACCAA
GGGCTAAACA TTGCCATTAT CACTGGCGGT GTACCCTATG CGCCTCAAGA GGAAGCCTTA
AAGGGCAATA TCGATATTCT GGTCGCGACC CCAGGTCGCC TGATGGAATA TTTAGACAAA
GGCAAATTCA GTGCGGAATC AGTAGACATA TTGATCATCG ACGAAGCCGA CCGTATGCTC
GATATGGGCT TCTCTGCCGT GGTTAAGGCG ATTGCCCTCG AAGCCCAAGG TCGTAAGCAA
AATATGTTGT TTTCCGCCAC CCTCGAAGGT AGCGGCGTCA TTCGTTTTGC CCGCGAAGTC
CTTAACGACC CGATCGAAAT CGATGTCGAC GCTCCGCGCA AAGAGAAGGC CAAGATCCAC
CAATGGATCC ACCTTGCCGA CGATAAAGAC CATAAGATTG CCCTGCTGTG CCATCTGCTC
AAGCAGGAAG AAGTGAAACG CGCCATCGTA TTCGTGAAGA CTCGCGATGT GGTGTCTAGC
CTCGAAGGTC AGTTACTTAA AGCCGGTATT CCCTGCGCCT TTATGCGTGG CGATATGGAG
CAGAAGAAGC GCTTCCAAGC CCTAAGCCGC TTTACCAAAG GCGAAGTGAA TGTATTACTG
GCGACCGATG TGGCCGCACG CGGTATCGAT ATCGACGATA TCAGCCACGT GATTAACTTC
GATATGCCAC GCTCTGCCGA TACCTATATT CACCGTATTG GCCGTACTGG CCGTGCTGGT
GCAAAAGGCA CAGCGATTTC ATTAGCCGAA GCCCACGATA TGCGTATTGT CGGTAAGATT
GAGCGTTATA TCGAACAGCC GCTTAAGCGC CGTATCATTG AGGAACTGCG CCCTAAGAAC
AAAGAAGCTC GAGTACCAAC CAAGAAAAAG GCTAAAGTGA AAGCCAAAGA AGCCGCGAAG
CGAACTAGCA AGAAAGAGGC CGCTAAAAAG GCCAGTAAAA TTGCCCGCAA GAAGCAATCT
TAA
|
|---|
| Protein sequence | MQFEDFQLDP SLLESLKAMG HLSPTTIQQE TLPHALEQRD ILARAPTGTG KTASFLLPAL
QHLIDFPRRY SGQARVLILT PTRELASQIH RYACHLATDQ GLNIAIITGG VPYAPQEEAL
KGNIDILVAT PGRLMEYLDK GKFSAESVDI LIIDEADRML DMGFSAVVKA IALEAQGRKQ
NMLFSATLEG SGVIRFAREV LNDPIEIDVD APRKEKAKIH QWIHLADDKD HKIALLCHLL
KQEEVKRAIV FVKTRDVVSS LEGQLLKAGI PCAFMRGDME QKKRFQALSR FTKGEVNVLL
ATDVAARGID IDDISHVINF DMPRSADTYI HRIGRTGRAG AKGTAISLAE AHDMRIVGKI
ERYIEQPLKR RIIEELRPKN KEARVPTKKK AKVKAKEAAK RTSKKEAAKK ASKIARKKQS
|
|---|
| |