Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0397 |
Symbol | |
ID | 4251730 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 444165 |
End bp | 444668 |
Gene Length | 504 bp |
Protein Length | 167 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638116956 |
Product | putative transcriptional regulator |
Protein accession | YP_732534 |
Protein GI | 113968741 |
COG category | [K] Transcription |
COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACATACC CAACATTCGC ACTCGATGAT ATTGGTTCAC TGCATGAGTC CGCCCAAGTG GAGTTCAAAC TCGCGCGGGG CCGCGATGGT CAAGGTCAGC TCCCCGAAGA TATTTGGGCG ACCTATAGCT CCTTCGCTAA CACCTTAGGT GGCGAGATTA TCCTCGGGGT GCGTGAAGAA CATGGTCATT TCACCATTGA AGGCATTCCG AATCCCCTGC CCGTGTTGCA GGAGTTTTGG GAAATCCTCG ATGATCCAAG CCGCACCAGC CATAATATCC TGGCGATTTC TGATGTACAG CTAATTGAAA TTATGAATAA AAAGCTGATA AGGATTCGCG TGCCACTCGC GCCAGAGCAC CTAAAGCCCG TGTTTATCGG CACAGATCCT TATGCGGGGA CTTATTTTCG CGTTGGGGAT GCCGACATGC ACGCCAGCCG AAGACAGGTC ACGCAAATGC TGCGCCGCGC CCATCATTGC ACTAAGCAAC TCAAGGCGCG TTAA
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Protein sequence | MTYPTFALDD IGSLHESAQV EFKLARGRDG QGQLPEDIWA TYSSFANTLG GEIILGVREE HGHFTIEGIP NPLPVLQEFW EILDDPSRTS HNILAISDVQ LIEIMNKKLI RIRVPLAPEH LKPVFIGTDP YAGTYFRVGD ADMHASRRQV TQMLRRAHHC TKQLKAR
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