| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0356 |
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| Symbol | |
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| ID | 4251550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 379266 |
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| End bp | 381092 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638116911 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_732493 |
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| Protein GI | 113968700 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCACC AACATCATTC CATCAGCCAT AGAATGACAC TCACTATTAT TGGTGTGAGT
TCGTTTTTTG CTGTCCTGAC TATGTTGATA CAGTTGATAT GGAACTATCA GGAGAGCATA
GATAACACTA CTGCGGATAT TCGCGAATAC TCTGAATCTA TCTTACCTAC AGTGGCTAAA
TCACTTTGGG ATGTTGACCA TGGTTTGTTA TCGGATTTGC TGTCCGGCCT AGGGATGATG
CCCATGGTGG CGAGCGTTAA TCTGGAAAGT GTGGATGGTG TGACGATACA AATGGGAAAA
TCCATAGGCG CCCATCATGA TGCAAAGCAA AGCTTGTTCT ATTATCCGGT CAAATATCAA
GATCAGCAGA TAGGTATGCT GATCGTGGGC TTAGATACTA ATAAGTTGTA CTACGAATTG
TGGCAGCAAC TGATTATTAT CGTGTTAGGT AACGGGCTTA AAACCCTGAT AATGATTTAC
CTCATCCTCA CACTGGTACG CTTATTGGTC ACCAACCGCT TATCGGCGTT GGAGCGGTTT
GCCAATCAAA TTAATTTGAA CTCCCTACCT AAGCTCAATG TGCCCATGAC TGTGATGCAA
AGCTCCGATG AGATTGGCCA TGTCGCCCAG TCGCTACAGG CCATGTATCA ACGCATCCGT
AATGATTTGG CGATCAATAA GCGCCAGCAA CGTGCGTTGA AACAACAGCA AAACCAGTTG
GCGAAATTGG TCGATGAGCG GACTCAAGAG CTCAATTGGC AATCCAAGGC GAATCAGCTA
TTAGCCGAAA TGTCGTTGCA ATTTTTGACG ACAGATACTT CTAAACTCGA CGAATCTTTA
GCCGAGGTGT GCCGTCGCAT TGGTAATTTA TTTGATGTCG AACGGGTGAG CATCATTGAG
TTTACCCAGC TACATGCCCG TTATCGCAGT TTTTGGAGTT GTGAGTCGCA GGCGGATCTG
GTCCAAGATA TTCCTGTCGA TATTGCGGCA GTGCTGGCAC AGAAATTTGT ATCAGAGTCG
ACATTAGTTA TTGAATCAAT AGATTATTTA AAAGATGAAT TCCCAGAGGA ATATCAGGCC
ATGTGTTCGG TTGGTATCTG CTCTATTGCT GCCTATGCGA TTAAAAATGC CGATGAATTA
TTAGGTTTAC TCTCGCTGTC TATGATCAGC CGCCCATTAA ACTGGAGTGT GCAAAAGAAG
GTGATGCTGA CGCAATTTGC GGCGGCACTG AACGAATTAT TGCTGCGGGA GGAAAAAGAG
CGACAGATGC TCAGCCTGCA ACAGGCCTTA GTATCGGTAA ATACCCAGCT GCGGGTGATG
GCCGACACCG ATGAATTAAC CGGATTAAGC AACCGTCGCC CCTTCACTCA AACCCTAGAA
ACCTTGCTCC AGCAAGACAC TCCGTTCGGC CTGCTCATGT TGGATGTCGA TTACTTTAAG
AGTTACAACG ATACCTACGG CCACCTCGAG GGCGATGCGG CGCTCAAGCG AGTGGCGCAG
GCGTTAACTC GGTGTGGTAT TTTGCCACAG GAGAATTTAC TTGCCCGAAT TGGTGGTGAG
GAGTTCGCGA TTGTTCTGCA ACAGATTTCA CCAATCCAAT TGGAGGCGAT AGCCAACCAG
CTCTGCTACC AAGTGGCCGC CTTGGAGATC CCCCATAAAA GCTCCCCAAA GGGCAAGATC
ACCCTGAGTA TTGGTGGGGT GTATTTTCCT AAGGAAAGCC AGGATAGCTT AACGTTGTCG
GAGGTGCTGC GCCGTACCGA TATTTGTCTG TATCGCGCTA AAGATCAGGG GCGCAACACC
GTGGTGATTG ATTCGAACTA TAAGTGA
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| Protein sequence | MKHQHHSISH RMTLTIIGVS SFFAVLTMLI QLIWNYQESI DNTTADIREY SESILPTVAK
SLWDVDHGLL SDLLSGLGMM PMVASVNLES VDGVTIQMGK SIGAHHDAKQ SLFYYPVKYQ
DQQIGMLIVG LDTNKLYYEL WQQLIIIVLG NGLKTLIMIY LILTLVRLLV TNRLSALERF
ANQINLNSLP KLNVPMTVMQ SSDEIGHVAQ SLQAMYQRIR NDLAINKRQQ RALKQQQNQL
AKLVDERTQE LNWQSKANQL LAEMSLQFLT TDTSKLDESL AEVCRRIGNL FDVERVSIIE
FTQLHARYRS FWSCESQADL VQDIPVDIAA VLAQKFVSES TLVIESIDYL KDEFPEEYQA
MCSVGICSIA AYAIKNADEL LGLLSLSMIS RPLNWSVQKK VMLTQFAAAL NELLLREEKE
RQMLSLQQAL VSVNTQLRVM ADTDELTGLS NRRPFTQTLE TLLQQDTPFG LLMLDVDYFK
SYNDTYGHLE GDAALKRVAQ ALTRCGILPQ ENLLARIGGE EFAIVLQQIS PIQLEAIANQ
LCYQVAALEI PHKSSPKGKI TLSIGGVYFP KESQDSLTLS EVLRRTDICL YRAKDQGRNT
VVIDSNYK
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