| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0313 |
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| Symbol | |
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| ID | 4251927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 340043 |
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| End bp | 341776 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638116868 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_732450 |
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| Protein GI | 113968657 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGTG CCACATGGAT GAGTTTAATC ACATTGGGAG CCTTGCTGCT CACTTGGGTG
ACATTCACGG CCAAAGCGGC AACGACCGAA ATTGCATGGC TGGATAATAC GGCCAGCCTA
ACTCAGTTTC GTATGGGCTA TTTTATCGAT ACCTCGGAGA ACATGCCCTT TACCGAAGTG
ATTCAACAGC CCTTTATCGA CTCGCCCAAT AGCGTATCGC TCGGCACTGC AGCCATCAAA
ACTTGGGCTA AAATCCCCCT AGTAAATACC AGTGATAAGT TACAAACCCT GTATTTGCAC
CATCCTTACG CCTATCACAA CCGTCAAGTC GGCCTCTACG AAATAGTCGA TGGCCAAGAG
ACGCAGCGGC GAATACTCGA CCTCGATGAC CCTAGCACCT ATGGCTGGAT CTATGGCGGT
GCAGCGGTAT TTGAGGTCAC GCTCGCGCCG CAGCAACGTA AAACCTTATA CATTGAAAGC
GTATCCTTTT CTCACCAGTG GTTTTCAATC GATTTATACA ACAAAGAGCA ATCACAGCGG
GCGCTGCTCG GGAGTTTTAC CGATATTGCC GTTATGGTAG GCATGCTGTT AGCGCTGATT
ATCTATAACC TTTTGTTATT TATGTATTCC CGCCAACGGG ACAATCTGTT TTACGCCTGT
TACTTAATCT CGGGCGGGAT CTGGATTGCC CTCTCCTACG GGCTGGTCGC CGAGATATTC
GAGTTTTACG GCTCGGCCAG CCTCTATTGG CACCTCACCC TGATGACCAT GCCCATCTTT
TTGATTTTAT TTATGATGGA TATTTTCGAG ACTCGTCAAC ATTATCGGTT TGAGCATTAC
GCTCTCGTGT TTGTGCTCGC CCTGTTAGTG GCCGAGTTTT GTTATGGCGT GGTCAATATC
ACTGGCGCGC TGCGTTACTC CAGCAGCTTA GCCGCCTTGA TGATGTTAAC TACCCTCTCG
GTCACCATTT CGCTGGTGAT AAAACGGCAT CCCATCGCTA AATATTTTCT CCTCGGCCAC
AGTCTTTTCG TCGCCTTTAG CGGCCTTGCG GTGATGTTTT ACAAAGGGCG TGCCGAGTTT
AATTATTTAT CCAGTCACGG TGTTGGCGTG GGCATTATGC TCGAGGCGCT AGTGCTTGCC
CTCATCATCG CCTATCGCAT TCGTCTGCTC GAAGAAATCA AAGCCTCGCA GGAGGAACTT
AAATATCAAG CGGCGACAGA TTCGCTCACC CAGCTATTTA ATCGGGGCCA TTTCCATAAA
GAAGCACAGC GGGTCTACAC TCAGGCCAGC ATCGCACAAC AGCCGATGGC GGTGATCATC
TGTGATATCG ACTTGTTCAA ACGGGTCAAC GACAAGTATG GCCACTTGAT GGGTGACCGG
GTGATTATCG ATATTGCCAC CACTCTTAAA CAGCATGCGC GTAAGTGCGA TCTTGTGGCG
CGTTATGGTG GTGAAGAATT TATTATGTTG CTGCATAACG TGTCCCTCAC CGAGGCACAT
CTCTGTGCCG AGCGGATCCG CTCCGCCGTC GCCGCGTTAA ACTTTACGGC AGAGACGCAA
GAAGTCTTTA CTGTCACCCT AAGTCTTGGA GTGGCCACAG TTGATTTTGA TCACCCCTTA
GAGCACGCCA TCAAACTGGC GGACGATGCC CTGTACTGTG CTAAACATCA GGGACGAAAC
AATGTTCAAT CCAGCAAAAT CAATAAATTG GAAATGCAAG CAGGCATAAA CTAA
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| Protein sequence | MSRATWMSLI TLGALLLTWV TFTAKAATTE IAWLDNTASL TQFRMGYFID TSENMPFTEV
IQQPFIDSPN SVSLGTAAIK TWAKIPLVNT SDKLQTLYLH HPYAYHNRQV GLYEIVDGQE
TQRRILDLDD PSTYGWIYGG AAVFEVTLAP QQRKTLYIES VSFSHQWFSI DLYNKEQSQR
ALLGSFTDIA VMVGMLLALI IYNLLLFMYS RQRDNLFYAC YLISGGIWIA LSYGLVAEIF
EFYGSASLYW HLTLMTMPIF LILFMMDIFE TRQHYRFEHY ALVFVLALLV AEFCYGVVNI
TGALRYSSSL AALMMLTTLS VTISLVIKRH PIAKYFLLGH SLFVAFSGLA VMFYKGRAEF
NYLSSHGVGV GIMLEALVLA LIIAYRIRLL EEIKASQEEL KYQAATDSLT QLFNRGHFHK
EAQRVYTQAS IAQQPMAVII CDIDLFKRVN DKYGHLMGDR VIIDIATTLK QHARKCDLVA
RYGGEEFIML LHNVSLTEAH LCAERIRSAV AALNFTAETQ EVFTVTLSLG VATVDFDHPL
EHAIKLADDA LYCAKHQGRN NVQSSKINKL EMQAGIN
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