Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0182 |
Symbol | |
ID | 4250727 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 208469 |
End bp | 209428 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638116730 |
Product | biotin--protein ligase |
Protein accession | YP_732320 |
Protein GI | 113968527 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0340] Biotin-(acetyl-CoA carboxylase) ligase |
TIGRFAM ID | [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region [TIGR00122] BirA biotin operon repressor domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000279859 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.096767 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGATA ACTGGGTGAG AAAACGCGAA ATACTGGGAT TACTGTCGAG CGAATATTTT GTCTCGGGTG AAGAGTTGGC GACACAACTG GGTATTTCTC GTGCGGCGGT GAGTAAGCAT GTGGATGCTT TGGAAGACTA TGGCGTGGCA ATTTACAGTG TCAAAGGCCG CGGTTACAAG TTAGCGAACC CTATCTCCCT TATCGACTCT GCTCGGTTAA TTCAGTCGAT TGATAATCGC TGCTTTTATT TTGATGAGAT CCCAAGCACC AACGGCTTTA TGTTAAGCCA TACGGGTGAG CTTAAGAGTG GCGACCTGTG TGTCGCGGAA TACCAGTCGG CAGGGCGAGG TCGCCGTGGC CGTACTTGGG TTTCTCCCTA TGGGCATCAT TTATATTTCT CGCAGTTTTG GTCATTTCCT CAAGGGATGG CGCAGGCTAT GGGCTTAAGC CTAGTGGTAG CTTGTAGCTT AGTCGAGGTA TTGAAATCCT TTGGCGTTGA TAATATCGGC GTAAAATGGC CAAACGATAT TTACCTTAAT TATAAAAAGC TTGCTGGCAT TTTAATTGAG ATGTCAGGTC AGGCGGACAG TGAGTGCCAA TTGATCATTG GTATTGGCGT CAACATGGCC ATGTCGGAAG ACCAAGGTAA GGGCATAGAC CAGCCTTGGA GCGATTTATC CGCTCTCGCG ACTATGCCGA ATAAAACGGA TCTCGTGATT GCGCTGCAAA AACAGCTGAA GAAAGATATT CAACTGTTTG AACGCGAAGG ATTAGCTGCA TTCAAATTGC GTTGGCAAGC GGCTGATTTA TTCTATGGCA AAGAGATCCG TTTGCTCATG GGTGAAAATC ATGTTGAGGG AATTTGCCGC GGCGTCGACG AACAGGGCGC AGTGCTACTT GAAACCGCCG ATGGCACACA GGCATACATC GGCGGCGAAA TTAGTTTAAG GCCGAGATAG
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Protein sequence | MSDNWVRKRE ILGLLSSEYF VSGEELATQL GISRAAVSKH VDALEDYGVA IYSVKGRGYK LANPISLIDS ARLIQSIDNR CFYFDEIPST NGFMLSHTGE LKSGDLCVAE YQSAGRGRRG RTWVSPYGHH LYFSQFWSFP QGMAQAMGLS LVVACSLVEV LKSFGVDNIG VKWPNDIYLN YKKLAGILIE MSGQADSECQ LIIGIGVNMA MSEDQGKGID QPWSDLSALA TMPNKTDLVI ALQKQLKKDI QLFEREGLAA FKLRWQAADL FYGKEIRLLM GENHVEGICR GVDEQGAVLL ETADGTQAYI GGEISLRPR
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