| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_4456 |
|---|
| Symbol | |
|---|
| ID | 4246109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 6869160 |
|---|
| End bp | 6870812 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 638109339 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_723916 |
|---|
| Protein GI | 113477855 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACCTG AAATTAACCT GAATAACTTA ATTCAAATTG ATCTAAACAG TATCATTTTA
ACTGTAGCTG AAGTCGGAGC CATCATATTA ATCTTTTTGG TAATTAGATT TTTTTTCGGC
AAAGCATATA AACAATTAAT CAAAGTATCA TCTATCAAAA CAAATAAAAA AAACGTTGAA
ATTATATACA AAAATATTCT AACTTTTTTA ACTATAAGTT GCTTAATCTC ATGCTTATTA
GTAGTCGGAG TTAATGGATG GCTGCTTTTT TATCAAAGAG AAAATTTAAT CGAATACCAA
ACTTCTTTAA TTAAAAATAT TTCTTGGAAT TATCTTATAG CCATAGGAAT TAGAATCCTA
AAAGTCTTAG GCATACTAAT TATAACTAAA TGGAGTATTC CATACATAAA CAAATTTATA
ACCGGGTTAA AAGAGCGGAT AAAAAAAATT GAATCTATCA ACGCAAGTGA CACCAGTATC
GAAAAATTAT TTGATTTTTT AAAGAGCAAC TTTAATAATC TTATCTGGGT GTTATATTTG
ATAATATCAG CTCAAATAAT GCTCTTACCA AAAGTAGTTA TTAACTATTT GTATATAGGT
TTAAAGATTT ACATAATTAT TATTATAGGA TTAATATTTA CTAAATCCAA TGCTACAATT
ATTTATACTT TTGATGCTTT TAGCAAGAAA TATTCCGAGA AAAAAAATAT TTTTGGTTTC
TACGAACGCC TAAAAAAATT AATACCTCTT GCCAAACGAT GTTTTGAATA TATAATCTAT
ACTGCTACAG CTACTTTAGT ATTTAAACAA GTTGATTTTA TTGCTTATTT AGCTCCTTAT
GGCACCAAAT TTATAGGAGT TATTGGGGTT ATATTTATGA GTCGTGTTTT TCAAGAAATT
GGTCAACTTT TACTAGCACA AATACTCCTC AGTCAAACTG ATGCAGATGA CTCATCTCAA
CAGAGAAGAA AAACATTTTT TCCTTTATTT AAAAGTTGTA TTAAATACCT GATTTACTTT
TGTACAGGCA TAGTAATTCT TTATACTATT GGCATTGACC CGACTCCTAT TTTAGCAGGT
GTAGGAATCA TAGGTTTTGC AGTTGGAATA GGAGCTCAAA GTCTCGTCGA AGATATAGTT
GCAGGTTTCT TTATTTTGTT TGAAAATTAT TACTTAGTAG GAGATTTTGT AGAGATAAAT
GGTATATATG GTGTTGTAAC GGGCATAGAA TTAAGAACAA CTCGTATTAA TTATGAAGAC
AAAAATCATA TTATCCATAA CCGTGATGTT AAAGATATAG TTAATTATCC CAGTTTTGGT
AATGCAGTAG TCATGCTCAA AATTCCTTAT CAAGTCAAGA TAAGTCAAGT GCATAAAATT
ATAGAAAAAG TAGGAAATAA AATCCTAGAA GATTATTCAA CAGATATAAT TGAACCAACA
ATAATAGAAG GAATAGAAGA GTTTTCTGAA CATCAAATAT TAGCTGAAAT AGTGACAAAA
GTTAAGCCAG GAAAACATTT AATGATTCAA AAAATTGTAG GTTTGATGAT TAAAGAAGCT
TTTGAGGAAG AAAATATTGA TCTTAGAGTG GTTAACCATA TCAAACTGAA TAATAGTAAA
CCTATTCCCA TATTTTTAAA AGGTATAGAA TAA
|
|---|
| Protein sequence | MIPEINLNNL IQIDLNSIIL TVAEVGAIIL IFLVIRFFFG KAYKQLIKVS SIKTNKKNVE
IIYKNILTFL TISCLISCLL VVGVNGWLLF YQRENLIEYQ TSLIKNISWN YLIAIGIRIL
KVLGILIITK WSIPYINKFI TGLKERIKKI ESINASDTSI EKLFDFLKSN FNNLIWVLYL
IISAQIMLLP KVVINYLYIG LKIYIIIIIG LIFTKSNATI IYTFDAFSKK YSEKKNIFGF
YERLKKLIPL AKRCFEYIIY TATATLVFKQ VDFIAYLAPY GTKFIGVIGV IFMSRVFQEI
GQLLLAQILL SQTDADDSSQ QRRKTFFPLF KSCIKYLIYF CTGIVILYTI GIDPTPILAG
VGIIGFAVGI GAQSLVEDIV AGFFILFENY YLVGDFVEIN GIYGVVTGIE LRTTRINYED
KNHIIHNRDV KDIVNYPSFG NAVVMLKIPY QVKISQVHKI IEKVGNKILE DYSTDIIEPT
IIEGIEEFSE HQILAEIVTK VKPGKHLMIQ KIVGLMIKEA FEEENIDLRV VNHIKLNNSK
PIPIFLKGIE
|
|---|
| |