| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_4080 |
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| Symbol | |
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| ID | 4242108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Trichodesmium erythraeum IMS101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008312 |
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| Strand | + |
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| Start bp | 6298181 |
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| End bp | 6298846 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638108981 |
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| Product | phage shock protein A, PspA |
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| Protein accession | YP_723562 |
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| Protein GI | 113477501 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000341426 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGGAATTT TTGACCACTT TTGGCGGGTA ATTCGTGCTA ACGTGAATAG CTTAATTTCT
AATGCTGAAG ATCCAGAGAA GATCCTGGAA CAGACAATAA AAAATATGCA GAATGACCTA
GTAAAATTAC GACAGGTAGT AGCAGAAGCG ATCGCTACCC AAAAACAGAC AGAAAGACAA
TCTTACCAAG CTAAATCTAC TGCCGATGAG TGGTATAGAC GAGCGCATTT GGCCTTACAA
AAAGGCCAAG AAAATTTGGC AAGGGAGGCT TTGACCAGAC GTAATTCATA TCAAGAAACA
GCTACGGTCA TGAAAGTTCA GATGGAACAG CAAAAACAGG TAGTAGAAAA ACTGAAGCAA
AATATGAAGC AGTTGGAACA CAAAGTTAGT GAAGCAAAAT TAAAAAAGAA TATGTATATT
GCCCGGGCAC GTTCTGCTAG GGCTTCGGAA AAGTTGAATA AAATGTTAGA CTTAGTAAAT
ACTGGCAATA CTTTAAGTAC TTTTGAGGAA ATGGAAGAAA AAATAACGCA GCTTGAGTCT
CAGTCTCAGA TGATAGCTGA GTTAGGAATT GATAGTTTGG AGAAAAAGTT TAATACTCTT
GAAGGAGATA ATCATATTGA GGCTGAGTTG AAGGCGATGA AAGCTAAAAT CTTGCGAAAG
AGGTAG
|
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| Protein sequence | MGIFDHFWRV IRANVNSLIS NAEDPEKILE QTIKNMQNDL VKLRQVVAEA IATQKQTERQ
SYQAKSTADE WYRRAHLALQ KGQENLAREA LTRRNSYQET ATVMKVQMEQ QKQVVEKLKQ
NMKQLEHKVS EAKLKKNMYI ARARSARASE KLNKMLDLVN TGNTLSTFEE MEEKITQLES
QSQMIAELGI DSLEKKFNTL EGDNHIEAEL KAMKAKILRK R
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