| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_3875 |
|---|
| Symbol | |
|---|
| ID | 4243538 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 5991252 |
|---|
| End bp | 5991998 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638108804 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_723386 |
|---|
| Protein GI | 113477325 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0565] rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.250027 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0540864 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAAAT TAGAATCAAC ACAAATTAGG ATAGTATTAG TAGAAGCCAA AGGGCCACTC
AATGTCGGTT CTGTAGCAAG GATTATGAAA AACATGGGCT TAAATCATTT GGTCTTAGTT
AATCCTCAAT GCGACCCTTA TGGAGCAGAA GCCCGACAAA TGGCGGTTCA TGGGGTAGAA
ATTTTAGAAA AGGCGACAAT CGTTCCCACA TTACCAGAAG CTCTAAAAGG ATGTCACAGA
GCGATCGCCA CTACATCCCT AGACCGTTCA TTGCCCACCC ACCTAGAAAA CCCTAAACAT
TCTCTACCTT GGCTACTGGG ATATTCAGGA GCTTTAATAT TTGGAAGAGA AGATCGAGGC
TTAACTAATG TAGAATTAAA TTATGCCCAA AGATTTGTCC GTATTCAATC TGATGACTCC
TATCCCTCTC TAAACCTAGC TCAAGCAGTA GCCATATGTT GTTATGAGCT ATATCAGGCA
CAACTTAATC AGGAGAATAA TCCTCAAAGC CAAGCAAATC GTGATTTAGA AGCCTCCCTA
GATGTTCTAG AAGCATATTA TCAGGATTTA GAAACCATAT TGTTGAAAAT AGGTTATCTT
TATCCCCATA CAGCATCCAG CAGAATGGAA AAATTTCGCC GTCTATATAA CCGCGCCTAT
CCCTCCACTC AAGAAGTGGC AATGTTACGA GGAATGATTA GACAAATCAA TTGGGCACTA
TCTAATTATG ATCATGATGG TACTTAA
|
|---|
| Protein sequence | MLKLESTQIR IVLVEAKGPL NVGSVARIMK NMGLNHLVLV NPQCDPYGAE ARQMAVHGVE
ILEKATIVPT LPEALKGCHR AIATTSLDRS LPTHLENPKH SLPWLLGYSG ALIFGREDRG
LTNVELNYAQ RFVRIQSDDS YPSLNLAQAV AICCYELYQA QLNQENNPQS QANRDLEASL
DVLEAYYQDL ETILLKIGYL YPHTASSRME KFRRLYNRAY PSTQEVAMLR GMIRQINWAL
SNYDHDGT
|
|---|
| |