| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_3660 |
|---|
| Symbol | |
|---|
| ID | 4243966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 5618966 |
|---|
| End bp | 5619670 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638108607 |
|---|
| Product | hydrolase |
|---|
| Protein accession | YP_723195 |
|---|
| Protein GI | 113477134 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02252] REG-2-like, HAD superfamily (subfamily IA) hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.150551 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAA TCATTTTGTT TGATGCTGTC GGTACCTTGT TTGGTGTACG CGATACCGTA
GGCGAAGTTT ATCAAAAATT CGCTATTGAG TGGGGAGTAG ACGTTTCTCC CTCTGCCGTT
AATCAAGCTT TTTTTGATAG TTTTAAAGCA GCGCCACCGA TGGCATTTCC TGGAGCAGAA
TCTGCAAAAA TACTAGACTT AGAATTTGAA TGGTGGTGTC AAGTCGCTGC CGAAACTTAT
AAAAAAGTAG GAGTATTCGA GCAGTTTTCT AATTTTAGGA GCTTTTTTGG GCAACTATAC
GATTATTTTG CTACTGGTGC CCCTTGGTTT GTTTATCCTG ATGTCAAACC AGCCTTAACT
AAATGGCATG AAAATGGAAT CAAGTTAGCA GTTTTATCTA ATTTTGATTC CCGACTATAC
CCAGTCTTAG CAGCATTGAA ATTAGCAGAT TTTTTTTCTG ATATTACTAT TTCTACAGAA
GTAGGAGCAG CAAAACCAGA TCAGAAAATT TTTACTGCTG CCTTACAAAA ATGTAATTTT
ACTATTGAGA AAGCTCTGCA TATTGGAGAT AGTTTGACTG CTGACTATGA GGGTGCAATT
AATGTAGGCA TAGAAGCATT TTGGCTCAAT AGAAACACTA TTTCACAGCC AGACATCAAT
CAGTTTGCTA ATCTTCTAGA TTGTTTTAAT TCTTACTTTA CCTAA
|
|---|
| Protein sequence | MTKIILFDAV GTLFGVRDTV GEVYQKFAIE WGVDVSPSAV NQAFFDSFKA APPMAFPGAE
SAKILDLEFE WWCQVAAETY KKVGVFEQFS NFRSFFGQLY DYFATGAPWF VYPDVKPALT
KWHENGIKLA VLSNFDSRLY PVLAALKLAD FFSDITISTE VGAAKPDQKI FTAALQKCNF
TIEKALHIGD SLTADYEGAI NVGIEAFWLN RNTISQPDIN QFANLLDCFN SYFT
|
|---|
| |