| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_3006 |
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| Symbol | rpsC |
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| ID | 4244890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Trichodesmium erythraeum IMS101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008312 |
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| Strand | - |
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| Start bp | 4654735 |
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| End bp | 4655463 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638108041 |
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| Product | 30S ribosomal protein S3 |
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| Protein accession | YP_722634 |
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| Protein GI | 113476573 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0092] Ribosomal protein S3 |
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| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.220868 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00714426 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGGACAAA AAATACATCC AACTGGTTTT AGACTGGGTA TTACCCAAGA GCATCGTTCT
CGTTGGTATG CTGACCCTAA GAACTATCCA GATACCTTGC AAGAAGATCA CAAAATTCGT
CAATATGTGA AGGCGACTCT TGCTAATGCA GGAATTTCTC AAATCAGAGT TGAGAGAAAA
GCAGAGCAGA TTGATTTAGA AGTTAGAACA GCTAGACCAG GTGTAGTAGT TGGTCGGGGC
GGTGCAGGAA TTGATTCTTT GAGGGTAGGG TTACAAAAAC TTTTGGGTAG TAACCGTCAG
ATCAGAATCA ATGTTGTTGA AGTCACAAAA GTAGATACTG ATGCTATGCT CATTGGTGAA
TATATTGCTC AACAACTAGA AAAAAGGGTT TCTTTTCGTC GGGTTGTACG TCAAGCTATA
ACTAGAGCAC AAAAAGCTGG TGTAGAAGGC ATTAAGATAC AAGTTAGTGG CAGGGTCAAT
GGAGCAGAAA TTGCTCGTAC TGAGGTTACC AGAGAAGGTA GTGTACCTTT GCATACATTA
AGAGCTAATA TTGATTATGC CTACTGTACC GCTAAAACAA TTTACGGTAT CCTTGGTATT
AAAATTTGGG TTTTTAAGGG AGAAATAATT CCTGGTCAAG AAGAAATTGC CAATGCAAAA
GTAAATCAAC CAAAACGTAG ACAACAAAAA CGTCGTCAAC AATATGATGA TAGGTCTAAC
GAAGGGTGA
|
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| Protein sequence | MGQKIHPTGF RLGITQEHRS RWYADPKNYP DTLQEDHKIR QYVKATLANA GISQIRVERK
AEQIDLEVRT ARPGVVVGRG GAGIDSLRVG LQKLLGSNRQ IRINVVEVTK VDTDAMLIGE
YIAQQLEKRV SFRRVVRQAI TRAQKAGVEG IKIQVSGRVN GAEIARTEVT REGSVPLHTL
RANIDYAYCT AKTIYGILGI KIWVFKGEII PGQEEIANAK VNQPKRRQQK RRQQYDDRSN
EG
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