Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tery_2316 |
Symbol | ligA |
ID | 4245198 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Trichodesmium erythraeum IMS101 |
Kingdom | Bacteria |
Replicon accession | NC_008312 |
Strand | - |
Start bp | 3587593 |
End bp | 3589917 |
Gene Length | 2325 bp |
Protein Length | 774 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 638107412 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_722012 |
Protein GI | 113475951 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.444372 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.080689 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCAAAAT TAACACTAGA AGTTGAGCAA TACACTCAAA ACTTAAGGGA AAAACTTCAA GAAGCTGGTT ATTCTTACTA TGTTCTTGAT CAACCAATTA TGGAAGATGC TGTTTATGAT CACCTACTTC GAGAGTTACA GGAATTAGAA AGTCAATATC CTCAATTAAT TGTTTCAGAT AGTCCTACTC AAAGAGTGGG AGAAAAGCCA GCAACTAAAT TTGTATCAGT TAAACATAAT ATTCCCCTTT ATAGTCTGGA AAATGCTTTT AATATTCAGG AATTAAAAAG TTGGCAAGAA CGTTGGCAGC GTCAAACACT TCTTGAAAAT CAAAGGTTAA CTCTCCCCCT AAGGGGGGAA GTCAAAATTA AAAACTCTAT TGATGAGTCA GATAATTTCT CTACAGTTAA TTCTTTAGCT CCAGTAATTA CTGGTTCTAA TTTTGATGAA ATAGATTTAG CAAGTGTAGA TTATATTTGT GAATTAAAAA TTGATGGTTC TGCTTTGGCT TTAACTTATG AAAATGGTTT ATTAGTACGA GGTGCTACTC GCGGTGATGG AATTATGGGG GAAGATATTA CTCAAAATGT TAAGACAATT AATAGTATTC CCTTAAAACT TAAAGTTGAT AATCCACCTT TATTAGTAGA AGTTAGGGGA GAAGCTTTTT TATCAATAAA TGTATTTGAA AATATTAATG CTGAAAGAGA AAAAATTGGA GAGATTATAT TTGCAAATCC ACGGAATGCA GCAGCAGGTA CTTTAAGACA ATTAGACTCA AAAATAGTAG CCAAACGTCG CCTAGATTTT TTTGCTTATA CACTTTATTT AGAAGAAAAT GAATCGAATT TTTTGCAGTT TTATACACAG TCGCAATGTT TAGAGTTACT TAAAAAATTA GGTTTTAAAG TTAATCCTAA CGGTCAAGTT TGTAGCTCTT TAAATGAAGT TGAAGCATAT TATCAGTACT GGGATAAACA ACGAGAAAAT CTACCTTATT TAACTGATGG AGTAGTTGTT AAACTTAATT CTTTATCACT ACAAGAGAAG TTAGGATTTA CTCAAAAGTA CCCTCGGTGG GCGATCGCTC TCAAATACCC TGCCGAAGAA ATTCCAACCA TTGTCCAAGG AGTTACAGTT CAAGTAGGGC GTACTGGGGC CATAACTCCT GTGGCCGAAT TAAAACCAGT TCAGTTGGCA GGGACAACTG TACAAAGGGC ATCTCTACAT AATAGCGATC GCTTGGCAGA ATTGGACTTA CACATTGGGG ATACAGTAAT AGTCCGCAAG GCAGGGGAAA TTATTCCAGA GGTGGTCAGA GTTTTACCAG AATTACGACC AAAAAAAGCT CAAAGATTTC AAATGCCCAC TCATTGTCCA GAATGTAGTC AACCTCTAAT TAAACCTAGA AATGAGGCGG TAACTCGATG TATTAATACT TCATGTCCCG CTATTCTTCG GGGATCATTA GCACACTGGG CATCTAGGGC AGCTTTGGAT ATTAATGGTT TGGGAGAAAA GTTGGTGCAG CAGTTGGTTA ATAGTGGTTT GGTTAAGTCT GTGGCAGATT TGTATAATTT GACTATGGAA GATTTGACTT CCCTGGAACG CATGGGGAAA AAGTCGGCGA ATAAGTTGAT AGAAGCTATG GGGACTTCAA AAGCTCAACC CTGGAGGCGG GTGCTTTATG GTTTGGGTAT TCGTCATGTA GGTACGGTGA ATGCAGAGTT GTTGACTCAA AAATTTCCGA CTGTGGCACA GTTAAGCCAA GCAAAGGCAA CTGACATTGA AACAGTGCAT GGTATTGGTC CTGAAATTGC TCAATATGTG GAACAGTGGT TTCGGGTACC AGCAAATCAG AATTTAGTTG AACGTCTAAA AATTGCTGGA GTGACAATGG AGACCAAAGA CTCTACAAGT GGTATGGCAA AGTTGACGGA AACTGTGCTA GCTATTCAGA ATTTAGCTGC ACGTCAGAAT TTAGTTGCAC GTCAGAATTT AGAGAATTTA GTTGAACGTC TAAAAATTGC TGGAGTGACA ATGGAGACCA AAGACTCTAC AAGTGATGTG GTAGAAGTGC AAAGTGGTTT GTTAAGAGGT AAAACTTTTG TGTTGACGGG AACTTTGCCA ACTATGAGGC GAGATGAGGC AAAAAACTTG ATTCAAAATG CTGGTGGTAA GGTTACAAGT TCGGTAAGTT CTAAGACTGA CTTTATTGTA GTGGGAGAAG ATGGAGGCTC TAAGTTAGAG AAGGCAAAAA AATTAGGGGT GAAAGAGTTG AGTGAGTCAG AGTTATTGGA AGCGTTGGCA GTGACTGGGA TATAG
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Protein sequence | MAKLTLEVEQ YTQNLREKLQ EAGYSYYVLD QPIMEDAVYD HLLRELQELE SQYPQLIVSD SPTQRVGEKP ATKFVSVKHN IPLYSLENAF NIQELKSWQE RWQRQTLLEN QRLTLPLRGE VKIKNSIDES DNFSTVNSLA PVITGSNFDE IDLASVDYIC ELKIDGSALA LTYENGLLVR GATRGDGIMG EDITQNVKTI NSIPLKLKVD NPPLLVEVRG EAFLSINVFE NINAEREKIG EIIFANPRNA AAGTLRQLDS KIVAKRRLDF FAYTLYLEEN ESNFLQFYTQ SQCLELLKKL GFKVNPNGQV CSSLNEVEAY YQYWDKQREN LPYLTDGVVV KLNSLSLQEK LGFTQKYPRW AIALKYPAEE IPTIVQGVTV QVGRTGAITP VAELKPVQLA GTTVQRASLH NSDRLAELDL HIGDTVIVRK AGEIIPEVVR VLPELRPKKA QRFQMPTHCP ECSQPLIKPR NEAVTRCINT SCPAILRGSL AHWASRAALD INGLGEKLVQ QLVNSGLVKS VADLYNLTME DLTSLERMGK KSANKLIEAM GTSKAQPWRR VLYGLGIRHV GTVNAELLTQ KFPTVAQLSQ AKATDIETVH GIGPEIAQYV EQWFRVPANQ NLVERLKIAG VTMETKDSTS GMAKLTETVL AIQNLAARQN LVARQNLENL VERLKIAGVT METKDSTSDV VEVQSGLLRG KTFVLTGTLP TMRRDEAKNL IQNAGGKVTS SVSSKTDFIV VGEDGGSKLE KAKKLGVKEL SESELLEALA VTGI
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