Gene HS_0100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHS_0100 
Symbol 
ID4239608 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaemophilus somnus 129PT 
KingdomBacteria 
Replicon accessionNC_008309 
Strand
Start bp93052 
End bp93987 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content28% 
IMG OID638103630 
Producttranscriptional regulator 
Protein accessionYP_718305 
Protein GI113460247 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTAGAA GCCACTCATC TAATGATTTT GAATTAATTA GTATAGATAG AGATGATTTA 
ACCTTTGAAT ATATTGAAAG TAGATTTAAA GAAAAAGGTA TCAAGTTTGA TGTATATGCT
TTATCGTTGA TAGGTAAAGA TAATAAATAC AATAATGCAG CTTTACTTTT AAGTGATCAA
AACCCAACAA TTAGTAAATT TGCAGTATTT CAAGGAACGG ATGTTAGTGT ATTTCTTGAT
AAAAAAGAAT TTACAGGTTC AATTTTAAAA CAGCTTGATG AAATACTATA TTTTGCTAGT
TTATCAAATC GGAAAAGAAT TACAATTTCA GGAAAACCAG GTCGAGAGGA ATACTTAGAT
ATTCCTAAAA GAGCGTTAAG AGAAGCAATT GTGAATTGTT ATTGCCATAG AGATTATACC
TTAAGTGGTG ATGTAAAAAT TGAATTTTAC GATGATAGAG TTCAAATTTT TTCTCCAGGA
AGTTTACCTG ATGGTTTAAC ACTTGAAAAT ATAAAAATGG GTATGGTGGC AAAAAGAAAT
AAAATAATTG TCAATACATT GGATAAAATT GATGTTATTG AAAACTACGC ATCAGGTGTT
AGAAGAATAT TTGAAGATTA TGCTGATTTT ACAAAACAAC CTGAATATTA TATTTCTAAC
AATGGTGTGA TCGTAACTCT ATTTAATAGA AACTATGAAG CCCAAAATGA AGCTCAAAAT
GAAGCCCAAA TTTTGAAACT GGATAATCAA AAACGAATAG AGAAAATTTT AGAGTTAATC
AAAGAAAATA AAAACATAAC AAGAAGTAAT CTTAAAGATA TTCTAGGTGT ATCCAAATCA
ACGATTGAGA GAGATATTTC AAAGTTAAAA GAAGAAGATA AACTAGAATA TATAGGAAGT
TCAAGGAATG GTTACTGGAA AGTAAAGAAT AATTAG
 
Protein sequence
MIRSHSSNDF ELISIDRDDL TFEYIESRFK EKGIKFDVYA LSLIGKDNKY NNAALLLSDQ 
NPTISKFAVF QGTDVSVFLD KKEFTGSILK QLDEILYFAS LSNRKRITIS GKPGREEYLD
IPKRALREAI VNCYCHRDYT LSGDVKIEFY DDRVQIFSPG SLPDGLTLEN IKMGMVAKRN
KIIVNTLDKI DVIENYASGV RRIFEDYADF TKQPEYYISN NGVIVTLFNR NYEAQNEAQN
EAQILKLDNQ KRIEKILELI KENKNITRSN LKDILGVSKS TIERDISKLK EEDKLEYIGS
SRNGYWKVKN N