Gene CPR_2274 details

Gene Information

• Locus tag: CPR_2274
• Symbol: ppdA
• ID: 4204886
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 2499064
• End bp: 2499486
• Gene Length: 423 bp
• Protein Length: 140 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 642566826
• Product: prepilin peptidase dependent protein A precursor
• Protein accession: YP_699550
• Protein GI: 110801935
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4970] Tfp pilus assembly protein FimT
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTTTAT TTAGAGTAAG TAAAATATTT AAAAAAAGAA ATGAAGGAAA ATTAACCACA 
AAAGAAGGGT TTACATTAAT TGAGTTAACT GTTGTCTTAG CAGTTATGGC AATAATTTTA 
ATGGTTATAG CTCCAAATTT TTCATCTGTT AAGGATAATG CTAAGGCAAA AGTAGATAAA 
CAAAATTGTG CTGCTATTGA AAGATCTGTT GAAATGTTAT TGGCGGAAGA TGCTATTTCA 
AGTAGTGTTA CAAATATAAA AATAACTTCA AGTAATGGAA ATGTACAAGT TTCAGGAATA 
AGTGATAATA CTAGTAAAAG TAAATTGGAA GATTTACTTG AAGATTTAGA TAAGCCTCAA 
AGTGGGGATT CTTATAATGT AGATATAGAA AAGGGAAGAA AAGTTACAGT GTCTGTAGTA 
TAA 

 

Protein sequence

MFLFRVSKIF KKRNEGKLTT KEGFTLIELT VVLAVMAIIL MVIAPNFSSV KDNAKAKVDK 
QNCAAIERSV EMLLAEDAIS SSVTNIKITS SNGNVQVSGI SDNTSKSKLE DLLEDLDKPQ 
SGDSYNVDIE KGRKVTVSVV