| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1574 |
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| Symbol | |
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| ID | 4206383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1764529 |
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| End bp | 1766226 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 642566125 |
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| Product | major facilitator transporter |
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| Protein accession | YP_698890 |
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| Protein GI | 110803512 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000345614 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAA AATCAGTTGG AATTACAATG GCTGTCTTCT TGTTAGGAAT CTTCATGGGT
GCTATTGACT CTGGTATAGT TTCACCAGCA AGAGATATAA TAGCTAATGG ATTAAAAGTT
TCACAAAATG CTAGTGTCTG GGTTGTAACA ATATATACCT TAGCATATGC AGTATCAATG
CCTCTTATAG GAAAACTTTC TGATAAATAT GGTAGAAAAA AAATTTACAT GGTTTCAATA
ACTCTATTTG GACTAGGTTC TTTACTATGT GGAATATCAG ATTATGTAAA TAGTTATACA
TTCTTATTAT TTTCAAGAGT TATAGAAGCA GTAGGTGGCG GAGGTATAAT GCCAATAGCT
ACAGCGTACA TAGGAACATC ATTCCCAGTT GAAAAAAGAG GTTCAGCGCT AGGAATGATT
GGAGGGGTAT ATGGAATAGC AACAGTTGTA GGACCAACCT TAGGTTCAGG AATACTTTCT
ATCTTTGGAG ATAAAAACTG GGGATTTTTA TTCTTAGTAA ATGTTCCAAT CAGTATAATA
ATATTACTTA TGGCAACTAA ATTAGAAGAA AATACTTCTG CACAAGGAAT TAAGAAATTA
GATGTTTGTG GTTCAGGAGT ATTAACAATA TTAATTTTAT CTTTAATGTA TGGAGCTACA
AACTTAAAAT TCTATGATTT TGCTAATTCA ATAAAATCAC TAGATGTTTG GCCATATCTT
TTAATATTTA TAATATCAAT TCCAATATTA GTTTTGGTGG AAAAGAAAGC AGAAGATCCA
GTAATAAACT TATCTTACTT TACTAATAAG GAAATAGCTA TAACTTTAAT ATTAAGTTTT
GTTGTAGGTT GTGGATTAAT GGCAACAGTA TTTATTCCTC AATTTAGTGA AAATATATTA
AGAACACCAA TGGGTAGTGG TGGATATATA GTTACAATAT TTGCAATATT TGTAGGTATA
GCAGCACCTT TAGGTGGAAA ATTCATAGAT AAAATAGGAG TTAAAAAAGT ACTATTAATA
GGTATGTCTT TAGTTATAAT AGGTAACCTT TATCAAGGAT ACGTAACAAC TAAACACCCA
GGTATGGTTA ACTTAATAAT AGGTTTAGCT ATTATGGGAT TTGGCTTAGG ATTCTCTATG
GGAACACCAA TAAATTACTT AATGCTTAGT TTAGTACCAG ATAATGAGGC TACAGTTGGA
CAATCAGCAG TATCATTAAT TAAATCCATA GGTATTGCAG TATCACCAAA TATTCTTATT
AACTTTATAT CAGATGCAGG TAGAAGAGTA CCAGGAGCAT TACAAAAAGT TATGCCACAT
ATAGATGGAA TGTCTAATAT TATGTCAAAT AGTGGTGGTG CTTCAAATTT TAATAATTCA
ATGGCAAATG CCAGTGTTAC TAATATATTT AGTCTTATAA AAGAAATGGT ACAATCACAA
TTTGCAGCTT TAGGAGATAA GTTTTCAAAT AATCCTCATA TGAATATTGG TATGATTGAA
AAATCATATA TGCAAAGTTT AGATGGAGCT AAAGGTGCAA TAGAAACAGC CTTCCAAAAA
ACTATGAATA CAGGGTACAC TAAATTATTC GTAACATGTG CTATTATAGC TTTAATAGGG
CTAATATTAA CAGCTATGTT AAATAATAAT TTAATAACAA TGAAAAATAG AAGATTAGAA
AAGAAGGAAA AAAACTAA
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| Protein sequence | MKKKSVGITM AVFLLGIFMG AIDSGIVSPA RDIIANGLKV SQNASVWVVT IYTLAYAVSM
PLIGKLSDKY GRKKIYMVSI TLFGLGSLLC GISDYVNSYT FLLFSRVIEA VGGGGIMPIA
TAYIGTSFPV EKRGSALGMI GGVYGIATVV GPTLGSGILS IFGDKNWGFL FLVNVPISII
ILLMATKLEE NTSAQGIKKL DVCGSGVLTI LILSLMYGAT NLKFYDFANS IKSLDVWPYL
LIFIISIPIL VLVEKKAEDP VINLSYFTNK EIAITLILSF VVGCGLMATV FIPQFSENIL
RTPMGSGGYI VTIFAIFVGI AAPLGGKFID KIGVKKVLLI GMSLVIIGNL YQGYVTTKHP
GMVNLIIGLA IMGFGLGFSM GTPINYLMLS LVPDNEATVG QSAVSLIKSI GIAVSPNILI
NFISDAGRRV PGALQKVMPH IDGMSNIMSN SGGASNFNNS MANASVTNIF SLIKEMVQSQ
FAALGDKFSN NPHMNIGMIE KSYMQSLDGA KGAIETAFQK TMNTGYTKLF VTCAIIALIG
LILTAMLNNN LITMKNRRLE KKEKN
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