Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1060 |
Symbol | truA |
ID | 4206319 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 1208309 |
End bp | 1209055 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 27% |
IMG OID | 642565616 |
Product | tRNA pseudouridine synthase A |
Protein accession | YP_698382 |
Protein GI | 110803601 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0101] Pseudouridylate synthase |
TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAAATA TAAAGATTAC TTTAGATTAT GATGGGAGTA AGTACAAGGG ATGGCAAAAG CAAAACCAAA AGGGAAGTAA TGTTTCTACA GTTCAAGATA AATTAGAAAA AGTACTAACT AAAATGACTA GTGAAGAGAT TCAACTAATT GGTTGTGGAA GAACTGATAG TGGTGTACAT GCAAAAAATT ATGTAGCAAA TTTCAAGACA AATTCTCTTA TGACTCTAGA ACAAATTATT AAATACATAA ATGAATATTT ACCTGAAGAT ATAAGGGTAA AGGAAATAAG AGAAGCAAGC GAAAGATTTC ATGCTAGATT TAATGTTAAG TCTAAAACAT ATGAATATAC CATTGATAAC AATAAGTTTA AAGATGTATT TTTAAGAAAA TATGCATGGC ATGTTGAAGA AAAGTTAGAC TTAGAAGCTA TGGAAGAAGG AGCAAAATAT TTATTAGGCA CTCATGACTT TAAGAGTTTT ACAAGTTTAA AATCAAAGAA CAAATCAACT TTAAGAACTA TAAATAGCAT TGAATTTCAT GAAAATAATA ATATATTAAG TATAAAGATA AATGGAAATG GCTTCTTATT AAATATGGTT AGAATAATAG TAGGAACTTT AGTAGATGTA GGACTTGGAA AAATTGAACC CAAATATATA AATGATATAC TTGAAGCTAA AGAAAGAGCA AAAGCTTCAG AAAAAGCACC AGCTCATGGA CTTTGTCTTT TAGAATTAAA TTATTAA
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Protein sequence | MRNIKITLDY DGSKYKGWQK QNQKGSNVST VQDKLEKVLT KMTSEEIQLI GCGRTDSGVH AKNYVANFKT NSLMTLEQII KYINEYLPED IRVKEIREAS ERFHARFNVK SKTYEYTIDN NKFKDVFLRK YAWHVEEKLD LEAMEEGAKY LLGTHDFKSF TSLKSKNKST LRTINSIEFH ENNNILSIKI NGNGFLLNMV RIIVGTLVDV GLGKIEPKYI NDILEAKERA KASEKAPAHG LCLLELNY
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