| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0996 |
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| Symbol | |
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| ID | 4205811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | + |
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| Start bp | 1137054 |
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| End bp | 1138853 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 26% |
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| IMG OID | 642565553 |
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| Product | sensory box protein |
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| Protein accession | YP_698319 |
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| Protein GI | 110802746 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2206] HD-GYP domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.133788 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTCAA ATTTATTAGA GGTATTATTA GATAACATAC CTTATTCAGT ATGGTTAATA
GGAATAGATG GTAGATTTAT TTTTGTGAAT AAATATTACT CAAATGCTTT AAATTTGAGT
AAAGAATATA TAATTGGTAA GAGTTTAAGT GAAATTTATA CTAAAGAGGT AGCAGATGAA
TATATTAAAA ATTATAATCT GGTAAGAGAT GAGGAAAAGC CAAATCTTTT TTCAGGATAT
GAAAATGGAT TAGGATATCA TGATGGATCA TTTTTAGAGT GTTATTTAGC CCCTATAAAA
GAAAATGGAG AAATAAAGTA TTTTTTAGGA ATTCTTCAAA ATCAAAGTGA AAGAAAAAAG
TATGAGGAAG AGTTAATAAA TCAAAAGGAA CTTTTAAATA CTCTTGTAGA ATCTATTCCA
GATGGAATTT ATCATAAAGA TAAGGATGGT AAGTATTTAA AATGTAATAA CACTTTAGTA
AAAGATTACT ATAAGATAAC TAAAGCAGAA ATAATAGGAA AAGATATAAA GAGTATTTAT
AAAAAGGCTT CCAATAGAAA AGGTATTTTT AAGGAAGAAA AAATACTAGA TAAGCTTATA
CTTCAAGATG ATAAAGTTAT AAATACCAAG AATAAATTAA AAGAAAAAAT AAAGATAGAA
TTAAATAGAA AGATAAGATA CATAGAGTCT ATTAAGGTAC CTGTTATAGA TAAAGGTGGA
GTAGTAACTG GTATTGTAGG GGTAGTTAGA GATGTAACTG AGAATGTTAT TTTAGAAAAT
AAATTAAAAA AAATGAGTTA TAGAGATAAA CTTACAGGGC TTTATAATAG AGCTTATTTC
GATGAAAAGT TAAAAGAATT AAATAATAAA GAGTTTTTTC CTTTAAGTTT TGTAATGGGA
GATTTAAATG GACTTAAGGT TATAAATGAT GCTATTGGAC ATTTAGAAGG AGATAAAATT
TTAAAAGAAA TTTCAAGGGT AATAAAAAAT TCTTGTAGAA AAGATGACCT TATATTTAGA
TGGGGAGGAG ATGAGTTTTG TATTCTTTTG CCTAAAACAA CAGAGGAAGA AGCAGAAGCT
ATATGTAATA GAATAAGGAA AAATTGTAAG CTTAATCATA AAACTATAAT TCCTTTAAGT
ATAGCACTTG GAGTATCTAG TAAAAAAGAA TCTAAAAAAC CAATAGATGA AGTTTTAGTA
GAAGCTGAAG ATAAAGTTTA TAGAGAAAAA TTGGTGAATG AAAAACGCAT AAAAAAGAAT
ATAATAGACT CATTAAATAA AGAGCTTTTT TTAAGACATG ATTATATCAA AGAACATATA
AATAGAGTTA AAAAGTATGC TGTTGAACTA GGTAAGAAGA TGAACTTATC AGAAAAGGAA
TTAAAAAATT TAAAAATGCT AGCTAAACTT CATGATATAG GCAAAGTAGG AATTCCTGAG
GAAATACTAT CTAAACCAGG TAAGTTAAAA AAAGAAGAGT ATGAAATAAT AAAAACTCAT
GCTGAAAAAG GATATAGAAT TGCTATGTTT AATCCAGAGT TTGAAAAAAT AGCACCATGT
ATATTAGCTC ATCACGAGAA ATATGATGGT ACTGGATATC CATTAGGACT AAAAGGTAAT
GATATTCCAC TACTTGCTAG AATTATAAAT GTAGTAGATT CTTATGATGC TATGACAAAT
AAAAGGGTCT ATAAAGGAAG CCTTAGTGCT GAAGAAGCTA AAAAGGAGCT TAAAAAGAAT
TCTGGTACTC AATTTGATCC TATGATTGTA GAGGAATTTT TAGAGTTAAA AAGAATTTAA
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| Protein sequence | MNSNLLEVLL DNIPYSVWLI GIDGRFIFVN KYYSNALNLS KEYIIGKSLS EIYTKEVADE
YIKNYNLVRD EEKPNLFSGY ENGLGYHDGS FLECYLAPIK ENGEIKYFLG ILQNQSERKK
YEEELINQKE LLNTLVESIP DGIYHKDKDG KYLKCNNTLV KDYYKITKAE IIGKDIKSIY
KKASNRKGIF KEEKILDKLI LQDDKVINTK NKLKEKIKIE LNRKIRYIES IKVPVIDKGG
VVTGIVGVVR DVTENVILEN KLKKMSYRDK LTGLYNRAYF DEKLKELNNK EFFPLSFVMG
DLNGLKVIND AIGHLEGDKI LKEISRVIKN SCRKDDLIFR WGGDEFCILL PKTTEEEAEA
ICNRIRKNCK LNHKTIIPLS IALGVSSKKE SKKPIDEVLV EAEDKVYREK LVNEKRIKKN
IIDSLNKELF LRHDYIKEHI NRVKKYAVEL GKKMNLSEKE LKNLKMLAKL HDIGKVGIPE
EILSKPGKLK KEEYEIIKTH AEKGYRIAMF NPEFEKIAPC ILAHHEKYDG TGYPLGLKGN
DIPLLARIIN VVDSYDAMTN KRVYKGSLSA EEAKKELKKN SGTQFDPMIV EEFLELKRI
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