Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0119 |
Symbol | |
ID | 4204138 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 149643 |
End bp | 150413 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 642564674 |
Product | ABC transporter |
Protein accession | YP_697456 |
Protein GI | 110802668 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.393598 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTAAAG AGGTTTTAAA GGTAAGTAAT ATAGAAAAGT ATTATGGTAA AAAAGGAAAT GTTACAAAGG CCATTAATGA TATTAGTTTT ACTGTTTCAG AAGGGGAGTT TGTTGGAATA ATGGGGGCTT CAGGAAGTGG TAAAACAACA CTTTTAAATT GTATATCAAC CATAGATAAG GTAACTAGTG GTCATGTATA TTTAGAGGGA GAGGATGTTA CAAGCTTTAG TTCAAAAAAG TTAGCTAAGT TTAGAAGAGA AAAAATAGGG TTTATATTTC AGGATTTTAA TCTTTTAGAT ACCTTAACAG CTTACGAAAA TATAGCCTTA GCTCTTACAA TTCAAAGAGT GAATAATAAG GAAATAGATA AAAGAGTAAG ACTCGTTGCA GAAGCATTAA ATATAAGTAA TGAGCTTAAT AAATATCCTT ATGAAATGTC AGGGGGACAA AAGCAAAGAG TGGCATCAGC AAGGGCAATA GTTACTAATC CATCTTTAGT ATTAGCTGAT GAACCAACAG GAGCCTTAGA TTCAAAGGCA GCTACCATGC TTCTTGAAAG CTTAGAAGAT TTAAATAAGA ATTTAAATGC AACAATTATG ATGGTAACTC ATGATGCTTT TACAGCAAGT TATGCAAATA GAATTTTATT TATTAAGGAT GGAAAGATAT TTAATGAACT TATAAAAGGA ACTGATTCTA GAAAAGAATT TTTCAATAGA ATAATTGAAG TCATAACTCT TCTTGGAGGT GACAGTAATA ATGTATTTTA A
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Protein sequence | MGKEVLKVSN IEKYYGKKGN VTKAINDISF TVSEGEFVGI MGASGSGKTT LLNCISTIDK VTSGHVYLEG EDVTSFSSKK LAKFRREKIG FIFQDFNLLD TLTAYENIAL ALTIQRVNNK EIDKRVRLVA EALNISNELN KYPYEMSGGQ KQRVASARAI VTNPSLVLAD EPTGALDSKA ATMLLESLED LNKNLNATIM MVTHDAFTAS YANRILFIKD GKIFNELIKG TDSRKEFFNR IIEVITLLGG DSNNVF
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