| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0110 |
|---|
| Symbol | |
|---|
| ID | 4205712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 140209 |
|---|
| End bp | 141771 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 642564665 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_697447 |
|---|
| Protein GI | 110802967 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4086] Predicted secreted protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA ATAAATTAAT AACAGCAATT ATATTAGCTG GAGCAATAAG TATTGGCTCA
TTTACAACAG TTTTTGCCGA TACTAAGGAA GTAGTAACTT TAGGAGCTAA TCTAAATTCA
ACTCAAAAAC AAGAGATGTT TAAGGAATTT GGAGTTAAAC CTAATGATGT TAAGGTTATA
ACTATGAATG TTAATGAAAT AAGAGAGCAA CTTGGATTAC CTAAAATAGT AGGAGAATTT
AAAGGTAATG CTTACTCAAG TGTTTTTGTT AAAATAGAAG AAAAAGGATA TGGATTAAAG
GTAAAAACAA ATAATTTAAC AGAGGTTACT AAAACTATGC TAAGTAATGC TTTGTTAACA
TCAAGGGTTA CAGATGCTGA TGTTATTGCT ACAGCGCCAT TCCCTGTAAC TGGGACATCT
GCTTTGGCAG GAGTTCTTCA AGCGTTTGAA AAGGCCACTG GAGAAAATAT ACCTGTTAAA
AATAAGGAAG TAGCAAGGCA AGAGTTAAGT ATAACAAATA ATTTAGCTAA AGCTAAAAAT
AGTGAAGGAC AAGAGATTGG AAGAGATGGA GCAAGTGCTA TAGTAAATCA AGCTAAAGAA
GAAGTTATAA AGGATAAACC TAAAAATGAC AAAGAGGTTG GTGAAATAGT AAATAATATT
ACAAATAACT ATAATATTGA GTTGACTCCA ACACAAGAGC AAGAATTAGT TGGTCTTTTA
GCCAATATAA ATTCTTTAGG ATTAGATTAT TCTAAATTAA AAGGAGAACT TGATAGCCTT
TCGAATAATA TACAGGAAAC TTTAAAAGAA AATGGACAAG AACTTAAAGA AAGTGGAACT
TTAGATAGAA TCTTAAATAA AATTTTAGGA GTTTGTACTG ATATAAAAAA TTGGTTTGTA
GCACACTTGG GTGATGGAGA AGTTACTATA AATGGAGTTA CATATGATAA AGATGGTAAT
ATGATAAACA AGGATCAATT AAAGAATATA GGAACTTCAA TAAGTGATGA TGACAATGAC
ACTAGTAATA ATGAAAGTAA AAATAATACA GAAGATAAAT CACAAAAAAG TGATTCTAAG
GATAAAGAAA TTGATAAGGC TAATAGCAAT AAGCAAGATG CTTCTAATTC AGAAGGAGAA
CAAGAAAGTA AGAGCAATAG TTCTTTAAAT AATGATAATA AAGGTAATAA AGAATCTCAA
AATAATAATG CTAAAGGTGA TAAAGCGTCA CAAAATAGTA AATCGAAAAA TGGTGTAAGT
TCATCAAAGA ATAATTCAAA TAAAAATAAT AGTGGAAGCA GTAATAATTC AAAGGATAAA
AGTAAGGAAA CTATAAAACT TGAGGATGGT ACTGTAATTC CTAAGTATAA TTCAAAGGGT
GAAGAATATA ATCCTGTTAC TGGTGGATAT GGACATATGC AAGAAACTGA AGACGCTGGA
AAGGATTCTG ATCAAACTAT AGATTATATA ATAGTTGATG GGAAGAAGGT TCCACTTCAT
GATGAACAGG GAAGAGAGTA TAATCCTGAG ACAGGAAGAT ATGGAGATCC TGATGATAAT
TAA
|
|---|
| Protein sequence | MKKNKLITAI ILAGAISIGS FTTVFADTKE VVTLGANLNS TQKQEMFKEF GVKPNDVKVI
TMNVNEIREQ LGLPKIVGEF KGNAYSSVFV KIEEKGYGLK VKTNNLTEVT KTMLSNALLT
SRVTDADVIA TAPFPVTGTS ALAGVLQAFE KATGENIPVK NKEVARQELS ITNNLAKAKN
SEGQEIGRDG ASAIVNQAKE EVIKDKPKND KEVGEIVNNI TNNYNIELTP TQEQELVGLL
ANINSLGLDY SKLKGELDSL SNNIQETLKE NGQELKESGT LDRILNKILG VCTDIKNWFV
AHLGDGEVTI NGVTYDKDGN MINKDQLKNI GTSISDDDND TSNNESKNNT EDKSQKSDSK
DKEIDKANSN KQDASNSEGE QESKSNSSLN NDNKGNKESQ NNNAKGDKAS QNSKSKNGVS
SSKNNSNKNN SGSSNNSKDK SKETIKLEDG TVIPKYNSKG EEYNPVTGGY GHMQETEDAG
KDSDQTIDYI IVDGKKVPLH DEQGREYNPE TGRYGDPDDN
|
|---|
| |