Gene CPF_1885 details

Gene Information

• Locus tag: CPF_1885
• Symbol: def
• ID: 4203570
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: -
• Start bp: 2121220
• End bp: 2121687
• Gene Length: 468 bp
• Protein Length: 155 aa
• Translation table: 11
• GC content: 31%
• IMG OID: 638082754
• Product: polypeptide deformylase
• Protein accession: YP_696318
• Protein GI: 110800596
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.366875
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGTTA AGAAAATAGT TCAAATAGGA CACGAAGCTT TAAAAAAGGT TTCAGAACCT 
GTTAAAGATG TTAATGAAGT TAAAGGATTA ATACAAGATT TAAAAGATAC ATTAGCAACT 
GTAGAAGGAA TAGGATTAGC TGCACCTCAA ATAGCAGTTA ATAAAAGAGT TGTTTATATA 
AATTTTGGAG ATGGTGAGAA TGAATATGTT CTTATAAATC CAGAGGTAAC AGGTGTTTCA 
AAGGAAACTT ATGAAGATTA TGAAGGTTGT TTAAGCTATG TAATGCATGA GGGATTAGTT 
GAAAGACCAA GAGCAGTAAG AATACAAGCT TTAAATGAAA AGGGCGAATT AAAAGTTTAT 
GAAGCTCAAG ATCTTTTAGC AAGATGTTTC TTACATGAGA TAGATCACTT AGAAGGTATT 
ATGTACGTTG ATAGAGCTAA AGAAATGTAC GAATTAGTTG AAAAATAA 

 

Protein sequence

MAVKKIVQIG HEALKKVSEP VKDVNEVKGL IQDLKDTLAT VEGIGLAAPQ IAVNKRVVYI 
NFGDGENEYV LINPEVTGVS KETYEDYEGC LSYVMHEGLV ERPRAVRIQA LNEKGELKVY 
EAQDLLARCF LHEIDHLEGI MYVDRAKEMY ELVEK