| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1874 |
|---|
| Symbol | |
|---|
| ID | 4201000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2106958 |
|---|
| End bp | 2107764 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 638082744 |
|---|
| Product | cation efflux family protein |
|---|
| Protein accession | YP_696308 |
|---|
| Protein GI | 110801140 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3965] Predicted Co/Zn/Cd cation transporters |
|---|
| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0135582 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTAT TTGATGGAAT GTATTCCTTA GGTGGTGTAA TTTTATCATT ACTAGCCCTA
ATGGGAAGCA TTTATATAAA TAAAAAAGAT TATGAGAAGT ATCCCTTTGG TAAGAAGATG
ATAGAACCTT TAATAGTAAT AATTAAATCC TTAGCAATTT TTATTATGTG TATATATTCA
CTTATAGGTT CTATTAAAGA TTTAATAAAT GGGGGTAATG AAGTTCAATA TGGGTATGCC
TTAATATATG CCCTAATATC AACTTTAGGG TGTGGAATTG CATATTTTTT CTTAAAGAAA
AAAGGAAAAG CTATTAACTC AAGTTTAGTA AATATAGAAA GTAGTCAATG GTTAATGGAC
ACTTTATTAA GCATGGGAGT TTTAGTAGGA TTTTTAATAG CAAATATAAT TAAGCATACA
GAGTTTATTT GGTTTAATAG ATACTTAGAC CCATTAATGG TTATTATTTG TTCATCGGTA
TTTATAAAAA TGCCTATAAA GTCCTTCGGT GATGGATTAA AAGAACTTTT AGAGTTTAAG
GCAGATGATA GTATAACTTT AGAAATAGAT AAACTTGTAG AGGGAATAGA GAGAGAATAT
AACTTTGAAG ATACTATTAC AAGGGTTTCT AAAACGGGAA ATGATTTAAG AATAGAAATA
GATTTTATAT ATAATGAAGA ATCTAATATT AAAGTATTAG ATGAAATGGA TGGGGTAAGA
GAAAAAATAT TTAATTCTTT ATCACATATA AATTATGAAA AATGGTTAAA TGTATCCTTT
ACTAAGGATA AAAAGTGGGC TATATAA
|
|---|
| Protein sequence | MILFDGMYSL GGVILSLLAL MGSIYINKKD YEKYPFGKKM IEPLIVIIKS LAIFIMCIYS
LIGSIKDLIN GGNEVQYGYA LIYALISTLG CGIAYFFLKK KGKAINSSLV NIESSQWLMD
TLLSMGVLVG FLIANIIKHT EFIWFNRYLD PLMVIICSSV FIKMPIKSFG DGLKELLEFK
ADDSITLEID KLVEGIEREY NFEDTITRVS KTGNDLRIEI DFIYNEESNI KVLDEMDGVR
EKIFNSLSHI NYEKWLNVSF TKDKKWAI
|
|---|
| |