| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1829 |
|---|
| Symbol | |
|---|
| ID | 4203058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2062609 |
|---|
| End bp | 2063562 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 638082699 |
|---|
| Product | ABC transporter, permease protein |
|---|
| Protein accession | YP_696263 |
|---|
| Protein GI | 110799128 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1079] Uncharacterized ABC-type transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGGAAA CAATTCAACA AATATTTCCT TATGCAATAG CTTTTACTAT ACCTCTTTTA
ATAACCGCAT TAGGTGCTTT ATTTTCTGAA AGAAGCGGTG TAGTAAATAT AGGACTTGAT
GGTCTTATGA TCGTAGGATC TTTTAGTGGG GCATTTACAG TATCAAAGCT TCAAGAGGCT
ATGCCAGGTA GCTCACTTCC TTTATGGATT GGTTTAGGAG TTGCAGTTTT AGTAGGAATA
TTATTCTCAT TATTACATGC ATTTGCAAGT ATAAATTTAA ATGCAGATCA GGTAATAAGT
GGTACAGCTA TAAATATGAT AGCTGGAGCT TTAACTGTAT TCTTAGCTAG AAATATGACA
GGTAGTGGTA ATATAAGAAT TATGCAAGGT TTTATACCGA AGGATGTTCC AGTATTATCT
TCAATACCAA TAATAGGAGA TTTATTCTTT TCAAAAACTT ATGCAACTAC ATGGTTAGTT
ATTTTAATAC TTGCTATAAG TACATTCTTA TTATATAAGA CAAGTTTTGG ATTAAGACTT
AGAGCTTGTG GAGAACATCC TCAAGCTGCT GATGCTGCAG GTATAAATGT TTATAAAATG
AGATATATAG GTGTTATGAT ATCAGGAGCA TTTTCATCTC TTGGTGGAGC TATAATACTT
GTAACTTACG GTGGAGAATT TACAGGAAGT GTTGCAGGAC TTGGATTCCT AGCCTTAGCT
GCTTTAATCT TTGGTCAATG GAAGCCATGG GGAGTATTAG GAGCAACATT CTTCTTTGGA
TTTGCTACAA CTATAGCAAA CGTATCTCAA ATAATACCAT CACTTTCAAC TATACCTCCA
GTATTACTTA AGATATTCCC ATATGTAGTT ACTTTAATCG CATTAATAGT ATTCTCTAAA
ACATCTCAAG CGCCTAAGGC TGCTGGAGAG CCATATCAAA AGGATAAGAG ATAG
|
|---|
| Protein sequence | MWETIQQIFP YAIAFTIPLL ITALGALFSE RSGVVNIGLD GLMIVGSFSG AFTVSKLQEA
MPGSSLPLWI GLGVAVLVGI LFSLLHAFAS INLNADQVIS GTAINMIAGA LTVFLARNMT
GSGNIRIMQG FIPKDVPVLS SIPIIGDLFF SKTYATTWLV ILILAISTFL LYKTSFGLRL
RACGEHPQAA DAAGINVYKM RYIGVMISGA FSSLGGAIIL VTYGGEFTGS VAGLGFLALA
ALIFGQWKPW GVLGATFFFG FATTIANVSQ IIPSLSTIPP VLLKIFPYVV TLIALIVFSK
TSQAPKAAGE PYQKDKR
|
|---|
| |