| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1513 |
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| Symbol | rpoN |
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| ID | 4202800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 1729103 |
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| End bp | 1730488 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 638082391 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_695956 |
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| Protein GI | 110800895 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAATGG ATTTTAATTT GAATTTAACC CAAGAGCAAA AGCTTATTAT GACCCAGCAA
ATGCAACTTT CAATAAAACT TTTGCAAATG TCAACATATG ATTTAAGAGA ATATATTGAA
AAAGAATTTT CAGAAAATCC TGTATTAGAA GCTCAGTATG AGGATATTAA AGAGGTATCA
AAAGAGCAAG ATAGATTAGA ATATAAAGAG TTAGTAAAAT ATTTAGAGTC AGATAACTAT
GGTTCTCAAA GTTATGGTGA ATATGATGAG GAAGGAATAT CACCTTTTAC TTTCATAAGT
AAGCCAGAAT CTTTAACAGA TTATTTAGAA GGTCAAATAT TAGAACTACC CATAGACGAA
TATATGAGAA GTGTATGTAG TTATATGGTC GAGTGTTTAG ATCAAAAGGG ATATTTAGAT
ATAAAAAAAG AAGAATTAAT GAATGAGCTA GAGTGTTCTG AAGAGACTTT TAATAGGGCT
TTAATAGTTA TTCAAAACTT AGAACCTGCT GGTATAGGGG CAAGAGATTT AAAGGAATGC
TTAGAAATTC AGTTAGAAAG AAAAGGTGAA AATGACCCTA TAGTTAAAGA GATTATAGAT
AATCATTTAG ACGATTTAGC AGATAATAGA TATCAAGTTA TTGCAAAGGA TTTAGACATT
ACTCCTAAAA AAGCACAAGA TTATGGAGAT TTAATAAAAA CTTTAGAACC AAAACCATCA
AGAGGCTTTT ACACTGGTGA TGAGGTGGGA TTTATAATTC CTGATGCGGA AATAAGAAAG
ATAGATGGAG AATTCCTTAT ATTAATGAAG GATGGAGTTT TACCTATGCT TTCAGTTAAC
CCTTTATATA AAGATATATT AAAAGATAGT ACTAATGATA AAGAGGCTAC AGAGTATGTA
AAGGAAAAAA TAGATAAAGC TATGTTTTTA ATTAAAAGTA TAGAACAAAG AAAAAGCACT
CTACACAAAG TTCTCCAAAA AATACTTGAA AAGCAAAAGG ATTATTTTGA GAAGGGTGAA
AAATATTTAA AACCTATGAC TTTAAAAGAA ATAGCTGAGA AGCTAGAAAT GCATGAATCA
ACTATTTCAA GAGCCATAAG AGATAAGTAT ATTTTAACTT CCATGGGAAC AATAAAGATA
AAGGATCTTT TTGTAAACTC AATAAGTAAT AAGGAAAAGA GTCATGGAGA AGAAGATGTT
ACAGTTATAA ATATAAAAAA GGCTTTAGAA GAAGTAATTA AGGAAGAGGA TAAAAGGAAG
CCCTTATCAG ATCAAGCCAT AAGCGAAATT TTAAAAGAAA AAGGAATGGC TATTTCAAGA
AGAACTGTGG CAAAATACAG AGAAGAGTTA GGCATAAAGT CATCTAGCAA GAGAAAAAGA
TTTTAA
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| Protein sequence | MLMDFNLNLT QEQKLIMTQQ MQLSIKLLQM STYDLREYIE KEFSENPVLE AQYEDIKEVS
KEQDRLEYKE LVKYLESDNY GSQSYGEYDE EGISPFTFIS KPESLTDYLE GQILELPIDE
YMRSVCSYMV ECLDQKGYLD IKKEELMNEL ECSEETFNRA LIVIQNLEPA GIGARDLKEC
LEIQLERKGE NDPIVKEIID NHLDDLADNR YQVIAKDLDI TPKKAQDYGD LIKTLEPKPS
RGFYTGDEVG FIIPDAEIRK IDGEFLILMK DGVLPMLSVN PLYKDILKDS TNDKEATEYV
KEKIDKAMFL IKSIEQRKST LHKVLQKILE KQKDYFEKGE KYLKPMTLKE IAEKLEMHES
TISRAIRDKY ILTSMGTIKI KDLFVNSISN KEKSHGEEDV TVINIKKALE EVIKEEDKRK
PLSDQAISEI LKEKGMAISR RTVAKYREEL GIKSSSKRKR F
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