Gene CPF_1478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1478 
Symbol 
ID4201866 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp1676115 
End bp1677146 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content28% 
IMG OID638082356 
ProductABC transporter, ATP-binding protein 
Protein accessionYP_695921 
Protein GI110799006 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00879269 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTTAA TAAACCTACA GAATATAAAT GTTTCTTATG ATAAGAAAAA TAATATATTG 
GAAAATCTAA ATTTAAAAGT TAAAAAAGGA GAATTAGTTT CTCTTTTAGG ACCAAGTGGG
TGTGGAAAGA CAACAACATT AAGGGTTGTA GCTGGATTTA TAGAACCAAC AGCAGGAAAG
TTTTTATTAG GAGATGAAGA TTATACAAAT ATACCTGTTC ATAATAGAAA CTTTGGATTA
GTCTTTCAAA GCTATGCATT ATTTCCTCAC TTAACAGTAG AAGAAAATGT AGCTTTTGGA
TTAAAAATGA AAAAGATGAG CAAAGAAGAA ATAAGAAAAA AGGTTGATGA TATATTAAAA
GTTGTTGATA TGAGCCATTT AGCAAAGAGG TATCCAAAGG AATTATCTGG AGGACAAAGA
CAAAGGGTTG CCATAGCAAG AGCCTTAGTA ATAGAGCCAA GTCTTTTATT ACTAGATGAA
CCTTTAAGTA ACTTAGATGC TAAATTAAGA TTAAAAATGA GAGTTGAAAT AAGAAAACTT
CAACAAAAGC TTGGAATAAC AACATTATTC GTAACTCATG ACCAAGAAGA ATGTTTTTCA
ATTTCAGATA AAGTAGCAGT TTTAAATAAA GGGGTAATAG AACAATTTGA TACTCCAGAA
AATATTTATT CAAATCCAGC AACAGAGTTT GTTGCAAGAT TTGTAGGTTT TGAAAACTTT
ATAGATTTAA TAAAGGTATC AGATGGTATA TACAAAAATG AGAGTGGAAT TAACTTAAAA
GTTAACAAGG TTAAGGATAA GAATGAAGTA AAAGCAACTA TAAGACCAGA TGATATAAAG
ATTGTAAAAG AGGATTTAGA AAACACAGTA GATGGAGTTA TAGAGGTTAG AACTTTCTTA
GGAAAGGCAT ACCAATATGA TATTAAAACA AAACTTGGGA ATCTAATTGT AAATAGTGAA
AATGACAGTA TATATGAAAA GGGACAAAAT ATAAAACTTC AATTACCAGT AGATAAAATA
GTAATTTTAT AA
 
Protein sequence
MDLINLQNIN VSYDKKNNIL ENLNLKVKKG ELVSLLGPSG CGKTTTLRVV AGFIEPTAGK 
FLLGDEDYTN IPVHNRNFGL VFQSYALFPH LTVEENVAFG LKMKKMSKEE IRKKVDDILK
VVDMSHLAKR YPKELSGGQR QRVAIARALV IEPSLLLLDE PLSNLDAKLR LKMRVEIRKL
QQKLGITTLF VTHDQEECFS ISDKVAVLNK GVIEQFDTPE NIYSNPATEF VARFVGFENF
IDLIKVSDGI YKNESGINLK VNKVKDKNEV KATIRPDDIK IVKEDLENTV DGVIEVRTFL
GKAYQYDIKT KLGNLIVNSE NDSIYEKGQN IKLQLPVDKI VIL