Gene CPF_1301 details

Gene Information

• Locus tag: CPF_1301
• ID: 4202370
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 1474245
• End bp: 1480142
• Gene Length: 5898 bp
• Protein Length: 1965 aa
• Translation table: 11
• GC content: 31%
• IMG OID: 638082182
• Product: glycosyl hydrolase family 31 protein
• Protein accession: YP_695747
• Protein GI: 110800450
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1501] Alpha-glucosidases, family 31 of glycosyl hydrolases

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.449133
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAGAA AGATGATTAT TAAAAAATTA AGTGTTTTAA CTTTAGGTAC TATTTTTACA 
TCTAATATTC TTTTACCTTC AACATTAATT TATGCTTTTC CAACAGAAGG GATAAATCAT 
AATATCGAAA AAGAGGAGAA AAAAGAAATA AAGGAAAGTA ATTATTCTCA AATTGGAGGA 
GTAGAAAATT TTACTCAAAA TGAAAACGAT GTATTATTGG ATTTAAGTAC AGGAGAAAAG 
ATTAGAATAT CATTCTTGAA AGAGGATGTT TTAAGAATTT ATATGGATCC TACAGGAGAA 
TTTCAAGAGG AGCCAACTCC AAATAGTAAG GACCATATTA CTAAAATAAT TAATAAGACT 
GAGGAAGAAT ATGAAAATCC TACTCCAATA GTGGAAGATG GAGAAATAAT AAAAATATCT 
ACAAGTGCTG TTCAGTTAAG AATAGAAAAA TCAACTGGAA AAATGGAGCT TTTTAATAAA 
TTAAATAATA AAACTGTATG GAAGGAAGCT GAACCTTTAA AGCATAGAGT AGACGGTACT 
ATTCAGACTC TTGAGTCAAA TGAAGATGAA TATTTCTATG GTGGAGGAAT GCAAAATGGT 
AGGTTCTCTC ATAAGGGTAA AAAGATAAAT ATTAAGAATG AAAATAATTG GGTAGATGGT 
GGTGTTGCAA GTCCAAATCC ATTTTATTTT TCAACTAATG GGTATGGAGT TATGAGACAT 
ACATTTAAAC CTGGTGAGTA TGATTTTGAA GTTTCTGCAT CAGGTAAAGT TACAACAAAA 
CATGAAGAGA ATCGTTTTGA TGCTTATTAT TTTATTGATG AAAAACCAAC AAATATAATA 
GATAAGTTCA CAGAACTAAC AGGAGAACCA GTTTTGTTAC CTGAGTATGG ATTTTATTTA 
GGACATGCAA ACTGTTATTC TCGTGACTGG ATAAATGATG AAACAGGACA AGAGTCTCAA 
ACACAAAAGC CTGGTTTTGA TAGACAAGAG AGTTTAATGG TTGATGCTAA AAAAGTAGTT 
GATGACCATG TTTCTAATGA TACACCACTT GGATGGTTTT TACCTAATGA TGGTTATGGT 
TGTGGATATG GACGCGAAGA AAGTATAGAT GGAAACATAG CTAATTTAAA AGAATTTGTT 
GATTATGCAA GAGGCTTTGG AATTCAAACA GGACTTTGGA CACAGAGTTC TTTAAAACCT 
ACAGGAAATC AAGAGGCTTA TCTTGAGCGT GATATAGATA AGGAAGTTGG GGTTGCTGGC 
ACAAATGGAG TTAAAACAGA TGTGGCATGG GTTGGAGCAG GATATTCATT TGCACTTAAC 
TCAGTTAGAC AAGCTGCTGA AGGAATAATA AATAATTCAA AAGATAAGGC AAGGCCATTT 
ATAGTAAGTT TAGATGGATG GGCTGGAACT CAGCGTTATG CAAGTATTTG GTCAGGAGAT 
CAATATGGTG GAGAATGGGA ATATATAAGA TTTCATATAC CAACATATAT AGGGGCTGGT 
CTTTCAGGTC AACCTAATGT AGGATCTGAT ATGGATGGCA TATTTGGAGG AAGTAAATTA 
GTACAAACTA GAGATTTTCA ATGGAAGGCA TTTACTCCAG TACAAATAGA TATGGATGGA 
TGGGGAGCAA ATGCTAAATA TCCATATGTA TTTGGAGAGC CTTATACTTC AATAAATAGA 
ATGTATTTAA AATTAAAAGC AGAAATGATG CCATATAATT ATAGTATAGC TAATGAAGCT 
ACTAATAATG GAGTTCCTAT GATAAGAGCT ATGATGCTTG AATATCCAGA AGAATATACT 
TATGGAACTG ATACACAGTA TCAATATATG TGGGGACCTA ATATGTTAGT TGCTCCTATA 
TATCAAAATA CAGATGGTGA TTCAGAAGGT AATGATATAA GAAATAATAT TTATCTTCCA 
GATGAAGAGC AAATTTGGAT TGATTATTTT ACTGGAAAGC AATATAGGGG TGGTGGAGTA 
TTAAATAATT TTGAAGCTCC TTTATGGAAA TTGCCTATCT TTGTTAAGAA TGGAGCAATA 
ATTCCAATGA CTAGTGAAAA TAATAATCCA GAAGAAAGAG ATGATTCCCA TCGTATTTAT 
GAAGTATATC CAAGTGGAGA TACAAGTTTT GAGGTTTATG AGGATGATGG TTTAACAACT 
GATTATAAGG AAGGAAAATC AGCTAAAACT ATGGTAACTT CTAGTGCTCC AAAGACTGGA 
AAAGGAACTG CTGTTATTAA TGTAGGATTA TTAGAAGGAG ACTATAATGG AATAGTTTTA 
GATAGATCAA CAGAGTTTAT AGTTAATGTA AGTGAAAAAC CAAGCAATTT AGGTGTTACT 
TTAGGTGGTA ATGATGTTCA GCTAACAGAA GCGCAAAGTT TAGAAGAATT TGAAAAGGGA 
AGCAATATGT ATTTCTATGA TGAAACTCCA AATCTTAATA AATATGCTAC TGAAGGTTCA 
GAATTTGCAA AGGTTGAAAT TACTTCAACA CCTAAGCTTC GTGTAAAAGT TGATAAAACA 
AATGTAAAAG AAAATGAAGT TAAATTAACC ATTGATGGAT TTAATAATAC TCAAGATATT 
GATAAAAATG AAGTGAATGA AAGTTTGGGA GTTCCAGGTA ATTTTAGGGC ATCAGAAGAA 
GATATAACTC CTGAATCTAT AAAATTAACT TGGGATGAAG TTGAAGGTGC TACAACTTAT 
GATGTTGAAA TTGATGGAAC TATATTTAAA AATATCAAAA ATACTGAGTA TTTAGATACA 
GGATTGAATT ATGATACTGA ATATAGTTAT CGTGTAAGAA GTGTAAATAA GGATGGACAT 
TCTAATTGGA GTGAATTGAT AAAGGTAAAA ACTGATTTAG ATCCATACAG AAATGTGCCT 
AAGGATATGA AAACAGAGTG GAAATGGGGA CAATATAGCA GTGATGAACC AAGTAAGGCT 
GTTGATGGAG ACGATTCATC ACAATTCCAC TCACAAGATA GTGCTATAGA TAAACCATTT 
ATAATTGATA TGCAAAAGGC ATATACAATA GAGAAATTAG AATTATTATT TAGAAAAAAT 
GGTAATGGTT CTGTTAAGAG AGCAGAAATA TATAGTAGCT TAGATGGAGT AACTTATGAA 
AAAGTATTTA GTAATGCTGA AGGTTCAGAT ATAGCACCAT GGGCTACTGA TGGAGAAGTT 
AAAACTATAA ACTTTAATAA GCCAATAAAG GTTCGTTACT TTAAGATTGT AACTAAGGAA 
TCTATAGGAA ACTTCTTGGC TATGAGAGAG TTTAGACCTT ATAAGGTTGA TGGAACTAAT 
GGACAGATTG TAGGAGATTG GAATAATAGT GGTTCAATAG AAGAGGGAGA TTTAGTATTC 
CTAGAAAACT ATGCTGGATT AACTACTGCT GACTCTGATT GGGGCTATGT ATCAATGGCA 
GATTTAAATA ACAATGGTTT GATTGATGCT TACGATATAT CTTATGTTTC TAGTAAATTG 
GAAGGTGGAG TAAAACCTTC AGAAGGATTA GAACTTCAAG GAGATATGAT GCTTGTACCA 
AGTAAATCTG AAATTAAATC TGGTGAAACA TTTACTATTG ATTTAGTAGG AACAGGTCTT 
TCAGATATTA ATGCATTTAG TGCAGAAATT CCTTTAGATT CTACTAAGTA TGAGTATATT 
AAGACTGAAG GAACTGTTTC CACTTCTGGA ATGAAAAATC TTTCAAAGGC AAGGGTTCAT 
ACAGATAATA CTCAACATGT TTATGTGAAC TTTACTAATA TAGGAGATAA TGTAAAAGTA 
AATGGAACAG ATACAATTGC TAGAATAACA TTAAAAGCTA AACAAAATAT TACCTGGGAT 
ATGGAGATTA GCAATGCTTT ATTAGTAGAT AGCAAGTTAA ATTCTAAGTC AGCTATTGCT 
AAAATTATTG ATTTAGAAAG TGAATTACCA TCTGGAAGAC CAAATAGTAG TAAGGTTTCA 
AAAGAAAACA TTACTGTAAG TGGTGACTCA AGTCAATTAC AATCAGGAAT GGGATTAGAT 
AAATTAATAG ATGGAACAAC AAGTAGTGAT GATAGTTCGC GTATGGATTT AAAATGGATA 
TTTACTTCTG ATCAACAAGA TAAGGGAACT CTTCCTTTTG AAATGACCTT TGAATTTAAT 
GAACCAAAAA CTTTAGAAAA TTTTACTATA TACAATAGAA TGAATTCAAA TGGAACCATA 
AATATTGCAG CCATGAAAAA GGTTAAGGCT GTTGGATATT TAAATGGAGA AGAATTTGAT 
TTAGGAGAAA AAGCTAATAT TACATCGGCT ACAACTGTTT ATGAATTAGG TGGAAAAGAA 
TTTGATAAGA TTGTAATTAC TGCTTTAGAT TCTCATAAAG ATAAGAATAC TTTAGCTATA 
AATGAAATTG AATTTTATGA GAAGAGTGAA GTGGAAACAA CAGGAATAAG TTTCGCAGAA 
AATACTCCAG AATCAGTATA TTTAAATAGA ATTACTCCTA TTTTTGCAGA AGTTACACCT 
GATAATGCAA ATAACTTAAA CTATAGATTA GCCTCAGAAA ACCCTGATAT TTTGCAAATT 
TTACGTGTAG ATAGAGAGGA TAAAGCAACT TATTATTTAC GTGGATTAAA TCCTGGAGTA 
GCAAAATTAG TTGCAACTAC TGCTGAGGGA AATCATAAAG TTGAAAAAGA AATAGTTGTT 
TTAGATGGAA TTGATAAAAC TTTATTAACT AAAGCCATAG AAGAAGCTAA ATCCTATGAA 
TCTTTAAGTG AGATATATAC TATTGAATCT TATGAAGCTT TACTTGAAGC TATTAAACAT 
GCTGAAGATG TATTAGAAAA TAGTTCAAGT GAAAAAGAAA TTGGAGATGC AATAATAAAT 
TTAAGAAGCA AAATTTCAAA GTTAGAAGAA CGTGAAACTG TAGAGGAGGA TAAGATAGAT 
TCTAGCAAGT TAGAAGCTAT TTATGCAACT AGTGAAGCAG ATAGAGATTA TAAAGAGAAT 
GCTGTAGATG GAGATGAAAA TACCATTTGG CATTCAGCTT ATCAAGCTGC AGATAAACTA 
CCAGTATCTA TAACAATTAA GTTAGATAAA GCTTATGATC TTAATCAAAT AGACTATTTA 
CCAAGACAAA ACAGTAGAAA TGGTCATGTT ACTGAGTATA AGATTGAAAC AAGTTTAGAT 
AATGAAAATT GGACTGAGGT AAGAACAGGG AACCTAGAAG TTAATGAAGC TGGTAATGCT 
TTGGCTAATA GAGGATATAA TCCTATAAGA TTTAATACTA TTAATGCTCA ATATTTAAGA 
TTTACAGCCC TTAAAACTTT AGGAGATACA AATAATAAGT ATGCAAGTGC AGCTGAATTA 
GTATTCTACG GAAAAGAGGG GAAAGTAAGT GCTGAATCTA TTACATTAGA AAAGACAGAG 
TTAAAATTAA ATGTTAATGA ATCAGAGCAA CTAAAAGCTG TATTAAATCC TATAGAAAGT 
AATGATACTA TTACTTGGAC TTCAAGTGAT GAGAGCATTG CTAAAGTAGA TGAAAATGGA 
GTAGTTACTG GAATAGGCAA AGGAGAAGCC TTAATCACTG CTACAATACC TAATGGAAAA 
TCTGCTACTT CCAAGGTTAT AGTAGAAGAT AGCGTTTCTG AGGAAATAAT AGTTAGTCCA 
GTAAGAGACT TTAAAGCTTC TCAGGTTAAT AAAAAAGATG TAACTGTAAC ATGGACTACT 
CCAGAATCAA CTACTGGATT AGAAGGATAT ATACTCTATA GAGATGGAAA GAAAGTAGCT 
CAGTTAGAAG CGGATGAAAC TTCATATATG TTTAATAAAT TAAACAGACA TACAATTTAT 
AATTTTAAGA TTGCAGCTAA GTATTCAAAT GGAAAAATTT CAGAAAAGTC ATCAATAACT 
ATTAGAACAG CAAGGTAG 

 

Protein sequence

MKRKMIIKKL SVLTLGTIFT SNILLPSTLI YAFPTEGINH NIEKEEKKEI KESNYSQIGG 
VENFTQNEND VLLDLSTGEK IRISFLKEDV LRIYMDPTGE FQEEPTPNSK DHITKIINKT 
EEEYENPTPI VEDGEIIKIS TSAVQLRIEK STGKMELFNK LNNKTVWKEA EPLKHRVDGT 
IQTLESNEDE YFYGGGMQNG RFSHKGKKIN IKNENNWVDG GVASPNPFYF STNGYGVMRH 
TFKPGEYDFE VSASGKVTTK HEENRFDAYY FIDEKPTNII DKFTELTGEP VLLPEYGFYL 
GHANCYSRDW INDETGQESQ TQKPGFDRQE SLMVDAKKVV DDHVSNDTPL GWFLPNDGYG 
CGYGREESID GNIANLKEFV DYARGFGIQT GLWTQSSLKP TGNQEAYLER DIDKEVGVAG 
TNGVKTDVAW VGAGYSFALN SVRQAAEGII NNSKDKARPF IVSLDGWAGT QRYASIWSGD 
QYGGEWEYIR FHIPTYIGAG LSGQPNVGSD MDGIFGGSKL VQTRDFQWKA FTPVQIDMDG 
WGANAKYPYV FGEPYTSINR MYLKLKAEMM PYNYSIANEA TNNGVPMIRA MMLEYPEEYT 
YGTDTQYQYM WGPNMLVAPI YQNTDGDSEG NDIRNNIYLP DEEQIWIDYF TGKQYRGGGV 
LNNFEAPLWK LPIFVKNGAI IPMTSENNNP EERDDSHRIY EVYPSGDTSF EVYEDDGLTT 
DYKEGKSAKT MVTSSAPKTG KGTAVINVGL LEGDYNGIVL DRSTEFIVNV SEKPSNLGVT 
LGGNDVQLTE AQSLEEFEKG SNMYFYDETP NLNKYATEGS EFAKVEITST PKLRVKVDKT 
NVKENEVKLT IDGFNNTQDI DKNEVNESLG VPGNFRASEE DITPESIKLT WDEVEGATTY 
DVEIDGTIFK NIKNTEYLDT GLNYDTEYSY RVRSVNKDGH SNWSELIKVK TDLDPYRNVP 
KDMKTEWKWG QYSSDEPSKA VDGDDSSQFH SQDSAIDKPF IIDMQKAYTI EKLELLFRKN 
GNGSVKRAEI YSSLDGVTYE KVFSNAEGSD IAPWATDGEV KTINFNKPIK VRYFKIVTKE 
SIGNFLAMRE FRPYKVDGTN GQIVGDWNNS GSIEEGDLVF LENYAGLTTA DSDWGYVSMA 
DLNNNGLIDA YDISYVSSKL EGGVKPSEGL ELQGDMMLVP SKSEIKSGET FTIDLVGTGL 
SDINAFSAEI PLDSTKYEYI KTEGTVSTSG MKNLSKARVH TDNTQHVYVN FTNIGDNVKV 
NGTDTIARIT LKAKQNITWD MEISNALLVD SKLNSKSAIA KIIDLESELP SGRPNSSKVS 
KENITVSGDS SQLQSGMGLD KLIDGTTSSD DSSRMDLKWI FTSDQQDKGT LPFEMTFEFN 
EPKTLENFTI YNRMNSNGTI NIAAMKKVKA VGYLNGEEFD LGEKANITSA TTVYELGGKE 
FDKIVITALD SHKDKNTLAI NEIEFYEKSE VETTGISFAE NTPESVYLNR ITPIFAEVTP 
DNANNLNYRL ASENPDILQI LRVDREDKAT YYLRGLNPGV AKLVATTAEG NHKVEKEIVV 
LDGIDKTLLT KAIEEAKSYE SLSEIYTIES YEALLEAIKH AEDVLENSSS EKEIGDAIIN 
LRSKISKLEE RETVEEDKID SSKLEAIYAT SEADRDYKEN AVDGDENTIW HSAYQAADKL 
PVSITIKLDK AYDLNQIDYL PRQNSRNGHV TEYKIETSLD NENWTEVRTG NLEVNEAGNA 
LANRGYNPIR FNTINAQYLR FTALKTLGDT NNKYASAAEL VFYGKEGKVS AESITLEKTE 
LKLNVNESEQ LKAVLNPIES NDTITWTSSD ESIAKVDENG VVTGIGKGEA LITATIPNGK 
SATSKVIVED SVSEEIIVSP VRDFKASQVN KKDVTVTWTT PESTTGLEGY ILYRDGKKVA 
QLEADETSYM FNKLNRHTIY NFKIAAKYSN GKISEKSSIT IRTAR