| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1103 |
|---|
| Symbol | |
|---|
| ID | 4203528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 1259269 |
|---|
| End bp | 1261191 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 638081984 |
|---|
| Product | glycosy hydrolase family protein |
|---|
| Protein accession | YP_695549 |
|---|
| Protein GI | 110799785 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00087575 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGTTA AATTAGTTGG ATTAAATGAG GAAATGTTAG AAGCTGTCAA TGGATTAGAA
GAACTAATTG ATTTTCAGCT TTATAATGAG AAGGGGAGTA ATAATGAAAA TTTAGAAATT
ATAAATGTTT CTAAGCTTCC TGAAGAATCA GAAAATGTAA TAGAAGTCCT TAGAGGAAAA
AATAATGAAA TAAGATATAA GAAAAAACAT CACTTTTTTA GGGCATTTAG TTTATATCTT
CAATTTCTTA AAAAGGGAGA GGAGAGTTTT AGAAAAAGTG AAAAAAGTTA TATTGATTCA
GTAGGAGCAA TGATAGATGC CTCAAGAAAT GCTGTCTATA GAGTTTCTGA GGTTAAAAAG
ATATTAGGAT ATATGGCATT AATGGGACAT AATAGGTGTA TGCTTTATAC TGAAGATACT
TATGAGATTG AGGGTTATCC ATACTTTGGT TATATGAGAG GAAGATATAC CAAAGAGGAA
TTAAGGGAAA TTGATGATTA TGGATACTCT TTAGGTATAG AGGTTGTACC TTGTATTCAA
ACTTTAGCTC ACTTAAAACA AACTTTAAGA TGGCCTTATG GGGAAGGGGT GAAAGACACT
CAAGATGTAC TTTTAGTAGG AGAGGAAAAG ACTTATAAGT TTATAGAGGC AATGATTTCT
TCTTTAAGAG AGTGCTTTAG AAGTAAAAAT ATTCATATAG GTATGGATGA GGCTTTTGAT
TTAGGAAGAG GCCATTATTT AACTAAACAT GGACATGTTC CTCACCAAGA GCTCATGGTA
GAGCATTTAA ATAAGGTTAA TGAAATAGCA AAAAAATATG ATTTTAAGCC AATGATTTGG
GATGATATGT TTTTAAGATG TGGAGCTCCA GATGGTGGAT ATTACGATTT AGATATAGTT
ATAACTCCTG AAATAGCAAA TAATATTCCA GAGGAAGTTT CCTTAGTTTA TTGGGATTAT
TATAATTCTG ATGAAGAAAA ATATAAGAAG CTTTTAGATA TTAGAGATGA TTTTAATAAT
AATATTATCT TTGCAGGAGG ATGCTGGAGG TGGAGTGGAT TTGCTCCAAA CTATTCAAAG
ACCTTTGAAA CAACAAATGC TGCCTTAAAT CAATGTAAGG CTAAAGGAAT AAAAGAAGTC
TTTGCAACGG CTTGGGGAGA TGATGGATCA GAAACGCCAA TATATTCAAT AATAGTAGGT
CTTATATTAT TTGGAGAGCA TGGCTATTAT AACAAGGTAG AGAAAGAATG GATAGATGAA
AGATGCAAAT CTTTAACAGG GCTTAGCATG GAGGACTTTA CTTCTTTAGA AGAATTAGAT
CTTGTTCCAT CAGTTAAAAT TCCTAATATG GAGGTTTGTA ATCCTTCAAA ATATATAGCT
TACCAAGATT TGCTTTTAGG AGCCTTTGAT AAGCATTTAG AGGGGCTAGA CTTAGAAGAA
CATTATATTA ATCTTTCTAA AAAATATGAG GAAATAGGAG AGAAAAGTGA GAGGTTTAAA
TTAATGTTTA CTATGTATTC TAAACTTGCT GCTTACCTTT CAGTTAAAAG TGAAATAGGA
TTAGAAATAA GAAAAGCTTA TCTAGAAAAG GATAAGGATG CATTAAGGCT TATAGCATAT
AACTTTATTC CAGAAATACA AGAAAAGCTA AAGAGTTTTC ATAAGAGTTT TAGGGATCTA
TGGTATAAAG AATGTAAAGG ACAAGGCTTT GAAGTTATGG ATATTAGACT TGGTGGAGTT
ATGGCAAGAT GCGATTCTGC TATGTATAGA ATAAAAGCTT ATCTTAAAGG AAATATTGAT
AAAATAGAAG AGCTAGAAGA GGAAAGACTT TATTTTTCTG AACATTTTGG GGGAGATGAT
TGTAAGCTTA TATGTTGCAA TGAATATCAA AAAATAGCAA CACAAAATAT TTTAAGTTGG
TAA
|
|---|
| Protein sequence | MRVKLVGLNE EMLEAVNGLE ELIDFQLYNE KGSNNENLEI INVSKLPEES ENVIEVLRGK
NNEIRYKKKH HFFRAFSLYL QFLKKGEESF RKSEKSYIDS VGAMIDASRN AVYRVSEVKK
ILGYMALMGH NRCMLYTEDT YEIEGYPYFG YMRGRYTKEE LREIDDYGYS LGIEVVPCIQ
TLAHLKQTLR WPYGEGVKDT QDVLLVGEEK TYKFIEAMIS SLRECFRSKN IHIGMDEAFD
LGRGHYLTKH GHVPHQELMV EHLNKVNEIA KKYDFKPMIW DDMFLRCGAP DGGYYDLDIV
ITPEIANNIP EEVSLVYWDY YNSDEEKYKK LLDIRDDFNN NIIFAGGCWR WSGFAPNYSK
TFETTNAALN QCKAKGIKEV FATAWGDDGS ETPIYSIIVG LILFGEHGYY NKVEKEWIDE
RCKSLTGLSM EDFTSLEELD LVPSVKIPNM EVCNPSKYIA YQDLLLGAFD KHLEGLDLEE
HYINLSKKYE EIGEKSERFK LMFTMYSKLA AYLSVKSEIG LEIRKAYLEK DKDALRLIAY
NFIPEIQEKL KSFHKSFRDL WYKECKGQGF EVMDIRLGGV MARCDSAMYR IKAYLKGNID
KIEELEEERL YFSEHFGGDD CKLICCNEYQ KIATQNILSW
|
|---|
| |