Gene CPF_1089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1089 
Symbol 
ID4203042 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp1245440 
End bp1246039 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content28% 
IMG OID638081970 
Producthypothetical protein 
Protein accessionYP_695535 
Protein GI110799112 
COG category[S] Function unknown 
COG ID[COG1434] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.00875904 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAATAC TAGATGATAT AACTAAATTT ATTTTTGTTT GTGATGAACC AAAGCCTTGT 
GACTTAATCT TTATACCAGG TTCATCCAAA TACGAGGTAA GCGAAAAGGC TAGTTTATTA 
TATAAACAAA GATTAGCAAA ATATGTACTT CCTTCAGGCA AGTTTTCTTG TAAACTAGAA 
AAATTTCCAA ATGAAAAAAT AATAAATAAA AAATATGCTG GTAAATATGA ATCTGATTGG 
GAATTCTGTA AGGAAGTTTT ATTTAGAAAT GATGTTCCAT TAGAATCCAT TTTAGTTGAA 
AATAAATCAA CTAATACCTC TGAAAACGCC TTTTTCTCAA GGAAAGTTAC AGATGATTTA 
AATATAGAAG TTAAAAGTGC TATATTATGT TGCCAAGCCT TTCATGCCAG AAGGGCTTTA 
ATTACTTACT CTTTAGCATA TCCTAATACA CAATTTTATG TTGTTCCAGT AGAAACTCAA 
GGAATTTCTA AGGATAACTG GTATAAATCT GATTACGGCA TAAATAGAGT TCTTGGTGAG 
CTAAGAAAAT GTGGCTCTTA TTTTGAAGAA TATATAAAAG ATTTAAATAA AATTATATAA
 
Protein sequence
MRILDDITKF IFVCDEPKPC DLIFIPGSSK YEVSEKASLL YKQRLAKYVL PSGKFSCKLE 
KFPNEKIINK KYAGKYESDW EFCKEVLFRN DVPLESILVE NKSTNTSENA FFSRKVTDDL 
NIEVKSAILC CQAFHARRAL ITYSLAYPNT QFYVVPVETQ GISKDNWYKS DYGINRVLGE 
LRKCGSYFEE YIKDLNKII