Gene CPF_0870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_0870 
Symbol 
ID4202026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp1034084 
End bp1034749 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content30% 
IMG OID638081753 
Producthypothetical protein 
Protein accessionYP_695320 
Protein GI110800359 
COG category[S] Function unknown 
COG ID[COG1284] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.00308368 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGAATCGA AAAAGAAGAT CTTGAGAAGT GTTTTATTAA TAGCACTAGG TTCAAGCATC 
TTAGCCTTTG GTAGCTATAA CTTTAACTAT CAAAATAATG TAACAGAGGG TGGAGTCTTA 
GGCTTATTAC TTTTAGTAAA AAATGTTTTT GATATATCTC CATCTATAAC AAACTTAATA 
ATTGATTTTT CATTATTTGC AATAGGTTCT AAATTCTTTG GCAAAAAATT CTTAGCATGT 
TCAATATTTG CAACTTTTTG CTTCTCAGTA TCCTATAGAT TTTGGGAAAG CATAGGATTT 
TTAACACCTA ACTTTACTAA TAATATGCTA GTTGCTAGTG TTTTAGCAGG TATTGGAGTT 
GGTGTTGGTG CTGGAATAGT ATTACGTGGT GGTGGTGCTT CTGGTGGAGA TGATGTAATA 
GCCTTATTAG GTAATAAATT TACTCCTCTT AAGGTACAAC ATGTCTACAT GTTAACAGAT 
GCCATTGTTT TATTAATGTC TTTAGTTTAT TTAGACTTTA AGCAAATATT CTTCTCAATA 
ATAGCAGTAT GTATAAGTGG TAAACTAATA AGCGTAATCT ATGAATACAA AAATGATGGT 
ATTGATACTA AAGATGAAAA TAAAGAAGCT GAAGTTTTAG AGAAAAATGG TTCTCTTACA 
GTTTAA
 
Protein sequence
MESKKKILRS VLLIALGSSI LAFGSYNFNY QNNVTEGGVL GLLLLVKNVF DISPSITNLI 
IDFSLFAIGS KFFGKKFLAC SIFATFCFSV SYRFWESIGF LTPNFTNNML VASVLAGIGV 
GVGAGIVLRG GGASGGDDVI ALLGNKFTPL KVQHVYMLTD AIVLLMSLVY LDFKQIFFSI 
IAVCISGKLI SVIYEYKNDG IDTKDENKEA EVLEKNGSLT V